Planaria EST Database

DrC_00305

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00305
         (830 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34327|YKX2_CAEEL  Hypothetical protein C13G5.2 in chromo...    74   4e-13
sp|P34677|YO27_CAEEL  Hypothetical protein ZK688.7 in chromo...    36   0.11 
sp|P34306|YKQA_CAEEL  Hypothetical protein C06E1.11 in chrom...    35   0.33 
sp|Q44740|ALCA_BORBR  Alcaligin biosynthesis enzyme                31   3.7  
sp|P65200|ALCA_BORPA  Alcaligin biosynthesis enzyme >gi|5404...    31   3.7  
sp|Q04648|CCBS_OENBE  Probable cytochrome c biosynthesis pro...    30   8.2  

>sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III
          Length = 351

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 6/200 (3%)
 Frame = +2

Query: 146 VNVIDKLKDT------WVIRLDRPHTNAEFHHININKLISGVHDPHIKLSPTAFKVGEKI 307
           +N+ DK   +      W IR DRPH N +FHHININK ++G+ DPHI L+PT  K    +
Sbjct: 133 LNIFDKTNKSSLGNPRWWIRFDRPHGNVDFHHININKAVTGLKDPHIPLTPTTAKTIGVL 192

Query: 308 AQGSKLIGSAQKILVPVSILLDCISLGISGMNDYENKTTRNTATXXXXXXXXXXXXXXXX 487
            + ++       +L   +++ +   +G     D  + TTRNT                  
Sbjct: 193 GKVAEKANDVAPLLTTAAMIYEAYRVGQEVHKDMNHGTTRNTIKTLAATSGTYSSGSIGA 252

Query: 488 XXXXXXXXLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTINKIGDNCDYDTINAKCKKCDR 667
                    IFPG+                  +          ++  +D +   C  CD 
Sbjct: 253 YAGSVIGTSIFPGLGTIFGAVVGGIVGGHFGGHYSHVATENALNHVKWDVVTFVCDGCDE 312

Query: 668 SFKVRTYLGEKESDFCSDCN 727
            +  + Y  E E   C+  N
Sbjct: 313 EYTWKKY-QEIEGTCCTRFN 331

>sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromosome III
          Length = 243

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 47/219 (21%), Positives = 75/219 (34%), Gaps = 4/219 (1%)
 Frame = +2

Query: 80  LGYFWSEGYKYEIRFNTSRATSVNVIDKLKDTWVIRLDR----PHTNAEFHHININKLIS 247
           +G+F++E  +  I+  T    +  +     D + IR  +    P T+ E   +++  ++ 
Sbjct: 31  IGWFYTEA-RLVIKNPTKNRYTYKIKVTNNDMFDIRTPKGFIDPETSIEIELLHVPGILL 89

Query: 248 GVHDPHIKLSPTAFKVGEKIAQGSKLIGSAQKILVPVSILLDCISLGISGMNDYENKTTR 427
             +D H   S    K   + AQ S  I S          + D + +  S  NDY   TTR
Sbjct: 90  PRNDVH-HFSVYYIKCDTE-AQSSGWIASVGSA---AGWVWDGMKVTGSVFNDYGTSTTR 144

Query: 428 NTATXXXXXXXXXXXXXXXXXXXXXXXXLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTIN 607
           NT                          LI PG+                   A     +
Sbjct: 145 NTVCTTATVAGGFLGGWSGGAIGSAVGTLILPGIGTAVGSFLGGASAALVAGKATIVVTD 204

Query: 608 KIGDNCDYDTINAKCKKCDRSFKVRTYLGEKESDFCSDC 724
           ++ D   YD     C+KC R F+ + Y  E     C  C
Sbjct: 205 RVLDTISYDIETVSCEKCGRGFRCKLY-KEGRDKLCYRC 242

>sp|P34306|YKQA_CAEEL Hypothetical protein C06E1.11 in chromosome III
          Length = 371

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 29/157 (18%), Positives = 53/157 (33%)
 Frame = +2

Query: 248 GVHDPHIKLSPTAFKVGEKIAQGSKLIGSAQKILVPVSILLDCISLGISGMNDYENKTTR 427
           G    ++  + TA  +G+   + +K+      IL   +++ +   +G     DY + TTR
Sbjct: 28  GSTSSYLSTAKTAGVLGDVAEKANKIA----PILTTAAVIYEMYQVGKEVKKDYHHGTTR 83

Query: 428 NTATXXXXXXXXXXXXXXXXXXXXXXXXLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTIN 607
           NT                           IFPG+                  +  +    
Sbjct: 84  NTIKTVATTATTYASASAAALAGSSIGSAIFPGIGTIFGGIIGGIAGGLFGGHVAETASE 143

Query: 608 KIGDNCDYDTINAKCKKCDRSFKVRTYLGEKESDFCS 718
           +I  +  YD     CK+C + +  + Y  E+    CS
Sbjct: 144 QILTHVKYDVTTLTCKECGKDYDWKKY--EEAQGVCS 178

>sp|Q44740|ALCA_BORBR Alcaligin biosynthesis enzyme
          Length = 461

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 520 PRSWYNYWRYCRITWRSYWYYV 585
           PRS Y+Y  YC++T R Y YY+
Sbjct: 68  PRSEYSYLNYCKLTNRIYSYYM 89

>sp|P65200|ALCA_BORPA Alcaligin biosynthesis enzyme
 sp|P65199|ALCA_BORPE Alcaligin biosynthesis enzyme
          Length = 461

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 520 PRSWYNYWRYCRITWRSYWYYV 585
           PRS Y+Y  YC++T R Y YY+
Sbjct: 68  PRSEYSYLNYCKLTNRIYSYYM 89

>sp|Q04648|CCBS_OENBE Probable cytochrome c biosynthesis protein
          Length = 577

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 472 RYWRSCCWCCDRIFNFPRSWYNYWRYCRITWRSYWYY 582
           R W   CWC   +     SW   W Y  + W  +W++
Sbjct: 417 RIWILTCWCFLNVGILLGSW---WAYHELGWGGWWFW 450

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,167,481
Number of Sequences: 369166
Number of extensions: 1373158
Number of successful extensions: 3367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3363
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00305

  1. Dr_sW_002_E01
  2. Dr_sW_008_D05