Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E01
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromo... 39 0.005
sp|P34306|YKQA_CAEEL Hypothetical protein C06E1.11 in chrom... 38 0.008
sp|Q44740|ALCA_BORBR Alcaligin biosynthesis enzyme 31 0.79
sp|P65200|ALCA_BORPA Alcaligin biosynthesis enzyme >gi|5404... 31 0.79
sp|P41449|Y044_NPVAC Hypothetical 15.0 kDa protein in GTA-P... 29 3.0
sp|O70433|FHL2_MOUSE Four and a half LIM domains protein 2 ... 28 5.1
sp|O35115|FHL2_RAT Four and a half LIM domains protein 2 (F... 28 5.1
sp|Q14192|FHL2_HUMAN Four and a half LIM domains protein 2 ... 28 5.1
sp|Q00174|LAMA_DROME Laminin alpha chain precursor 28 5.1
>sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromosome III
Length = 243
Score = 38.5 bits (88), Expect = 0.005
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = +2
Query: 2 GAVAGAAIGSLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTINKIGDNCDYDTINAKCKKC 181
G G+A+G+LI PG+ A +++ D YD C+KC
Sbjct: 163 GGAIGSAVGTLILPGIGTAVGSFLGGASAALVAGKATIVVTDRVLDTISYDIETVSCEKC 222
Query: 182 DRSFKVRTYLGEKESDFCSDC 244
R F+ + Y E C C
Sbjct: 223 GRGFRCKLY-KEGRDKLCYRC 242
>sp|P34306|YKQA_CAEEL Hypothetical protein C06E1.11 in chromosome III
Length = 371
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +2
Query: 2 GAVAGAAIGSLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTINKIGDNCDYDTINAKCKKC 181
GA+AGAAIG+ I PG+ Y + D +YD+ C+ C
Sbjct: 294 GALAGAAIGTAICPGIGTIVGGIVGGITGGVGGGYGSGKAAEAVMDQAEYDSYRTTCETC 353
Query: 182 DRSFKVRTYL 211
+ ++ Y+
Sbjct: 354 QKLYRCSKYI 363
Score = 35.4 bits (80), Expect = 0.042
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +2
Query: 5 AVAGAAIGSLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTINKIGDNCDYDTINAKCKKCD 184
A+AG++IGS IFPG+ + + +I + YD CK+C
Sbjct: 103 ALAGSSIGSAIFPGIGTIFGGIIGGIAGGLFGGHVAETASEQILTHVKYDVTTLTCKECG 162
Query: 185 RSFKVRTYLGEKESDFCS 238
+ + + Y E+ CS
Sbjct: 163 KDYDWKKY--EEAQGVCS 178
>sp|Q44740|ALCA_BORBR Alcaligin biosynthesis enzyme
Length = 461
Score = 31.2 bits (69), Expect = 0.79
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 40 PRSWYNYWRYCRITWRSYWYYV 105
PRS Y+Y YC++T R Y YY+
Sbjct: 68 PRSEYSYLNYCKLTNRIYSYYM 89
>sp|P65200|ALCA_BORPA Alcaligin biosynthesis enzyme
sp|P65199|ALCA_BORPE Alcaligin biosynthesis enzyme
Length = 461
Score = 31.2 bits (69), Expect = 0.79
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 40 PRSWYNYWRYCRITWRSYWYYV 105
PRS Y+Y YC++T R Y YY+
Sbjct: 68 PRSEYSYLNYCKLTNRIYSYYM 89
>sp|P41449|Y044_NPVAC Hypothetical 15.0 kDa protein in GTA-P79 intergenic region
Length = 131
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 131 IGDNCDYDTINAKCKKCDRSFKVR---TYLGEKESDFCSDCN 247
+ C+ +++ C +C +SF V TYL S C+DC+
Sbjct: 65 LNTECNVKVVDSACMRCRKSFAVYPAVTYLHCGHSCLCTDCD 106
>sp|O70433|FHL2_MOUSE Four and a half LIM domains protein 2 (FHL-2) (Skeletal muscle
LIM-protein 3) (SLIM 3)
Length = 279
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 170 CKKCDRSFKVRTYLGEKESDFCSDC 244
CKKC S R +L E++ C DC
Sbjct: 251 CKKCSLSLVGRGFLTERDDILCPDC 275
>sp|O35115|FHL2_RAT Four and a half LIM domains protein 2 (FHL-2) (Skeletal muscle
LIM-protein 3) (SLIM 3) (LIM-domain protein DRAL)
Length = 279
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 170 CKKCDRSFKVRTYLGEKESDFCSDC 244
CKKC S R +L E++ C DC
Sbjct: 251 CKKCSLSLVGRGFLTERDDILCPDC 275
>sp|Q14192|FHL2_HUMAN Four and a half LIM domains protein 2 (FHL-2) (Skeletal muscle
LIM-protein 3) (SLIM 3) (LIM-domain protein DRAL)
Length = 279
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 170 CKKCDRSFKVRTYLGEKESDFCSDC 244
CKKC S R +L E++ C DC
Sbjct: 251 CKKCSLSLVGRGFLTERDDILCPDC 275
>sp|Q00174|LAMA_DROME Laminin alpha chain precursor
Length = 3712
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 140 NCDYDTINAKCKKCDRSFKVRTYLGEKESDFCSDC 244
NC ++T+ C KC + E+D CS C
Sbjct: 369 NCQHNTVGINCNKCKPKYYRPKGKHWNETDVCSPC 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,496,131
Number of Sequences: 369166
Number of extensions: 300713
Number of successful extensions: 1204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)