Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_D05
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromo... 74 4e-13
sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromo... 36 0.11
sp|P34306|YKQA_CAEEL Hypothetical protein C06E1.11 in chrom... 35 0.33
sp|Q44740|ALCA_BORBR Alcaligin biosynthesis enzyme 31 3.7
sp|P65200|ALCA_BORPA Alcaligin biosynthesis enzyme >gi|5404... 31 3.7
sp|Q04648|CCBS_OENBE Probable cytochrome c biosynthesis pro... 30 8.2
>sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III
Length = 351
Score = 74.3 bits (181), Expect = 4e-13
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 6/200 (3%)
Frame = +2
Query: 146 VNVIDKLKDT------WVIRLDRPHTNAEFHHININKLISGVHDPHIKLSPTAFKVGEKI 307
+N+ DK + W IR DRPH N +FHHININK ++G+ DPHI L+PT K +
Sbjct: 133 LNIFDKTNKSSLGNPRWWIRFDRPHGNVDFHHININKAVTGLKDPHIPLTPTTAKTIGVL 192
Query: 308 AQGSKLIGSAQKILVPVSILLDCISLGISGMNDYENKTTRNTATXXXXXXXXXXXXXXXX 487
+ ++ +L +++ + +G D + TTRNT
Sbjct: 193 GKVAEKANDVAPLLTTAAMIYEAYRVGQEVHKDMNHGTTRNTIKTLAATSGTYSSGSIGA 252
Query: 488 XXXXXXXXLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTINKIGDNCDYDTINAKCKKCDR 667
IFPG+ + ++ +D + C CD
Sbjct: 253 YAGSVIGTSIFPGLGTIFGAVVGGIVGGHFGGHYSHVATENALNHVKWDVVTFVCDGCDE 312
Query: 668 SFKVRTYLGEKESDFCSDCN 727
+ + Y E E C+ N
Sbjct: 313 EYTWKKY-QEIEGTCCTRFN 331
>sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromosome III
Length = 243
Score = 36.2 bits (82), Expect = 0.11
Identities = 47/219 (21%), Positives = 75/219 (34%), Gaps = 4/219 (1%)
Frame = +2
Query: 80 LGYFWSEGYKYEIRFNTSRATSVNVIDKLKDTWVIRLDR----PHTNAEFHHININKLIS 247
+G+F++E + I+ T + + D + IR + P T+ E +++ ++
Sbjct: 31 IGWFYTEA-RLVIKNPTKNRYTYKIKVTNNDMFDIRTPKGFIDPETSIEIELLHVPGILL 89
Query: 248 GVHDPHIKLSPTAFKVGEKIAQGSKLIGSAQKILVPVSILLDCISLGISGMNDYENKTTR 427
+D H S K + AQ S I S + D + + S NDY TTR
Sbjct: 90 PRNDVH-HFSVYYIKCDTE-AQSSGWIASVGSA---AGWVWDGMKVTGSVFNDYGTSTTR 144
Query: 428 NTATXXXXXXXXXXXXXXXXXXXXXXXXLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTIN 607
NT LI PG+ A +
Sbjct: 145 NTVCTTATVAGGFLGGWSGGAIGSAVGTLILPGIGTAVGSFLGGASAALVAGKATIVVTD 204
Query: 608 KIGDNCDYDTINAKCKKCDRSFKVRTYLGEKESDFCSDC 724
++ D YD C+KC R F+ + Y E C C
Sbjct: 205 RVLDTISYDIETVSCEKCGRGFRCKLY-KEGRDKLCYRC 242
>sp|P34306|YKQA_CAEEL Hypothetical protein C06E1.11 in chromosome III
Length = 371
Score = 34.7 bits (78), Expect = 0.33
Identities = 29/157 (18%), Positives = 53/157 (33%)
Frame = +2
Query: 248 GVHDPHIKLSPTAFKVGEKIAQGSKLIGSAQKILVPVSILLDCISLGISGMNDYENKTTR 427
G ++ + TA +G+ + +K+ IL +++ + +G DY + TTR
Sbjct: 28 GSTSSYLSTAKTAGVLGDVAEKANKIA----PILTTAAVIYEMYQVGKEVKKDYHHGTTR 83
Query: 428 NTATXXXXXXXXXXXXXXXXXXXXXXXXLIFPGVXXXXXXXXXXXXXXXXXMYAVDYTIN 607
NT IFPG+ + +
Sbjct: 84 NTIKTVATTATTYASASAAALAGSSIGSAIFPGIGTIFGGIIGGIAGGLFGGHVAETASE 143
Query: 608 KIGDNCDYDTINAKCKKCDRSFKVRTYLGEKESDFCS 718
+I + YD CK+C + + + Y E+ CS
Sbjct: 144 QILTHVKYDVTTLTCKECGKDYDWKKY--EEAQGVCS 178
>sp|Q44740|ALCA_BORBR Alcaligin biosynthesis enzyme
Length = 461
Score = 31.2 bits (69), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 520 PRSWYNYWRYCRITWRSYWYYV 585
PRS Y+Y YC++T R Y YY+
Sbjct: 68 PRSEYSYLNYCKLTNRIYSYYM 89
>sp|P65200|ALCA_BORPA Alcaligin biosynthesis enzyme
sp|P65199|ALCA_BORPE Alcaligin biosynthesis enzyme
Length = 461
Score = 31.2 bits (69), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 520 PRSWYNYWRYCRITWRSYWYYV 585
PRS Y+Y YC++T R Y YY+
Sbjct: 68 PRSEYSYLNYCKLTNRIYSYYM 89
>sp|Q04648|CCBS_OENBE Probable cytochrome c biosynthesis protein
Length = 577
Score = 30.0 bits (66), Expect = 8.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 472 RYWRSCCWCCDRIFNFPRSWYNYWRYCRITWRSYWYY 582
R W CWC + SW W Y + W +W++
Sbjct: 417 RIWILTCWCFLNVGILLGSW---WAYHELGWGGWWFW 450
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,167,481
Number of Sequences: 369166
Number of extensions: 1373158
Number of successful extensions: 3367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3363
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)