Planarian EST Database

DrC_00303

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00303 TCTGCAATATTTCTTGTATCACAATTTCTGTTTGTCGAAAGCATTGGTGACATCACTGAT ATCAGTCAAGAAATTGGTGATTTGGGTACAGTTCTTGATGGAGCATCAAGGATTTTGTCG CTAGTCGGAGGTAGAGGTGTTGGATTAGCACCGGCTGGACATGGTCATGCGAGTCATTCA GATGCTTCATTTGATCCTCAATTTGCTCAAAAAGTTGGATTCGGTCCCAATAGTCATGCA CGCTCAAATTTTGCTGAAGTTCAACGAGGTCATGCAACACGTAAACGGAAATAAATTTGA TGAAATTATTGAAATGAAAATTTGATAATTTATGAAATTAAAACATATTTGCATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00303
         (355 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9GKQ8|DSG1_CANFA  Desmoglein-1 precursor (Desmosomal gly...    33   0.20 
sp|P36269|GGT5_HUMAN  Gamma-glutamyltransferase 5 precursor ...    31   0.77 
sp|Q61495|DSG1A_MOUSE  Desmoglein-1 alpha precursor (Dsg1-al...    31   1.0  
sp|Q5GF60|MATK_IRISA  Maturase K (Intron maturase)                 31   1.0  
sp|Q62565|SRY_MUSSI  Sex-determining region Y protein (Testi...    30   2.2  
sp|Q7TSF1|DSG1B_MOUSE  Desmoglein-1 beta precursor (Dsg1-bet...    29   2.9  
sp|Q9NZT2|OGFR_HUMAN  Opioid growth factor receptor (OGFr) (...    28   5.0  
sp|P37232|PPARA_XENLA  Peroxisome proliferator-activated rec...    28   6.5  
sp|Q12816|TROP_HUMAN  Trophinin (MAGE-D3 antigen)                  28   8.5  
sp|P20048|SEC59_YEAST  Dolichol kinase                             28   8.5

>sp|Q9GKQ8|DSG1_CANFA Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1) (DGI)
          Length = 1054

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +1

Query: 34   VESIGDITDISQEIGDLGTVLDGASRILSLVGGRGVGLAPAGHGHASHSDASFDPQFAQK 213
            V S   I+ IS  +G    V  G   + SL GG G+  +  G     H  +S D  F+Q 
Sbjct: 972  VVSGSGISGISGLVGSAMGVSGGGMAMNSLGGGGGLSSSMGGTATIGHVRSSSDHHFSQT 1031

Query: 214  VGFGPNSHARSNFAE 258
            +G    S ARS   +
Sbjct: 1032 LGSASPSTARSRITK 1046

>sp|P36269|GGT5_HUMAN Gamma-glutamyltransferase 5 precursor (Gamma-glutamyltranspeptidase
           5) (Gamma-glutamyltransferase-like activity 1) (GGT-rel)
           [Contains: Gamma-glutamyltransferase 5 heavy chain;
           Gamma-glutamyltransferase 5 light chain]
          Length = 586

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 161 CPAGANPTPLPPTSDKILDAPSRTVPKSPIS*LISVMSPMLSTNR 27
           CP G+  TP P + D++  AP R  P  P     S M P +  N+
Sbjct: 435 CPWGSGTTPSPVSGDRVGGAPGRCWPPVPGERSPSSMVPSILINK 479

>sp|Q61495|DSG1A_MOUSE Desmoglein-1 alpha precursor (Dsg1-alpha) (Desmoglein-1) (Desmosomal
            glycoprotein I) (DG1) (DGI)
          Length = 1057

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73   IGDLGTVLDGASRILSL-VGGRGVGLAPAGHGHASHSDASFDPQFAQKVGFGPNSHARSN 249
            +G +G +  G+S ++S  +G  G GL   G     H  +S D  F+Q VG    S ARS 
Sbjct: 989  LGGVGGI--GSSGLVSTTMGASGTGLNMGGTATIGHMRSSSDHHFSQTVGSASPSMARSR 1046

Query: 250  FAE 258
              +
Sbjct: 1047 ITK 1049

>sp|Q5GF60|MATK_IRISA Maturase K (Intron maturase)
          Length = 522

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
 Frame = -1

Query: 355 NANMF*FHKLSNFHFNNFIKFISVYVLHDLVELQQNLSVHDYWDRIQ------------L 212
           N N F  H  +NF +++F   +       LVE+  +L +  Y+++ +            +
Sbjct: 81  NKNRFVSHHHNNFCYSHFYSQVISQGFAILVEIPFSLRLXSYFEKKEIPXSHNLRSIHSI 140

Query: 211 FEQIEDQMKHLNDSHDHVQPVLIQH 137
           F  +ED++ HLN    +V  +LI H
Sbjct: 141 FPFLEDKLLHLN----YVSDILIPH 161

>sp|Q62565|SRY_MUSSI Sex-determining region Y protein (Testis-determining factor)
          Length = 311

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 274 HDLVELQQNLSVHDYWDRIQLFEQIEDQMKHLNDSHDHVQ 155
           HD  + QQ    HD+  + Q F   + Q +  +D H H Q
Sbjct: 162 HDHHQQQQQQQFHDHHQQKQQFHDHQQQQQQFHDHHHHQQ 201

>sp|Q7TSF1|DSG1B_MOUSE Desmoglein-1 beta precursor (Dsg1-beta) (Desmoglein-5)
          Length = 1060

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73   IGDLGTVLDGASRILSL-VGGRGVGLAPAGHGHASHSDASFDPQFAQKVGFGPNSHARSN 249
            +G +G +  G+S ++S  +G  G GL   G     H  +S D  F+Q +G    + ARS 
Sbjct: 992  LGGVGGI--GSSGLVSTTMGAAGTGLNMGGTATIGHMRSSSDHHFSQTIGSASPNMARSR 1049

Query: 250  FAE 258
              +
Sbjct: 1050 ITK 1052

>sp|Q9NZT2|OGFR_HUMAN Opioid growth factor receptor (OGFr) (Zeta-type opioid receptor)
           (7-60 protein)
          Length = 677

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 61  ISQEIGDLGTVLDGASRILSLVGGRGVGLAPAGHGHASHSDASFDPQFAQKVG 219
           + +  GD   V  G ++ L+L G      AP+GH  A HS+   +     + G
Sbjct: 461 VDEGAGDSAAVASGGAQTLALAGSP----APSGHPKAGHSENGVEEDTEGRTG 509

>sp|P37232|PPARA_XENLA Peroxisome proliferator-activated receptor alpha (PPAR-alpha)
          Length = 474

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 31  FVESIGDITDISQEIGDLGTVLDGAS 108
           F++ I DI DI+Q IGD G+   GAS
Sbjct: 31  FLQDIVDIQDITQTIGDDGSTPFGAS 56

>sp|Q12816|TROP_HUMAN Trophinin (MAGE-D3 antigen)
          Length = 1387

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 76   GDLGTVLDGASRILSLVGGRGVGLAPAGHGHASHSDASFDPQFAQKVGFGPNSHARSNF 252
            G LGT     S + +  G  G GL+ +  G  S  +ASFD   +  +GFG  S+  + F
Sbjct: 1247 GGLGTNASFGSTLGTSAGFSG-GLSTSD-GFGSRPNASFDRGLSTIIGFGSGSNTSTGF 1303

>sp|P20048|SEC59_YEAST Dolichol kinase
          Length = 519

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 202 IEDQMKHLNDSHDHVQPVLIQHLYLRLATKSLML 101
           IE Q++   D  DH  P++I +LYL     + +L
Sbjct: 380 IELQLRRFADDRDHSGPLIISYLYLLFGISTPLL 413

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,710,017
Number of Sequences: 369166
Number of extensions: 691502
Number of successful extensions: 3172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3158
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00303

Planaria EST Database

DrC_00303

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail