Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L12
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GKQ8|DSG1_CANFA Desmoglein-1 precursor (Desmosomal gly... 33 0.20
sp|P36269|GGT5_HUMAN Gamma-glutamyltransferase 5 precursor ... 31 0.77
sp|Q61495|DSG1A_MOUSE Desmoglein-1 alpha precursor (Dsg1-al... 31 1.0
sp|Q5GF60|MATK_IRISA Maturase K (Intron maturase) 31 1.0
sp|Q62565|SRY_MUSSI Sex-determining region Y protein (Testi... 30 2.2
sp|Q7TSF1|DSG1B_MOUSE Desmoglein-1 beta precursor (Dsg1-bet... 29 2.9
sp|Q9NZT2|OGFR_HUMAN Opioid growth factor receptor (OGFr) (... 28 5.0
sp|P37232|PPARA_XENLA Peroxisome proliferator-activated rec... 28 6.5
sp|Q12816|TROP_HUMAN Trophinin (MAGE-D3 antigen) 28 8.5
sp|P20048|SEC59_YEAST Dolichol kinase 28 8.5
>sp|Q9GKQ8|DSG1_CANFA Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1) (DGI)
Length = 1054
Score = 33.1 bits (74), Expect = 0.20
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = +1
Query: 34 VESIGDITDISQEIGDLGTVLDGASRILSLVGGRGVGLAPAGHGHASHSDASFDPQFAQK 213
V S I+ IS +G V G + SL GG G+ + G H +S D F+Q
Sbjct: 972 VVSGSGISGISGLVGSAMGVSGGGMAMNSLGGGGGLSSSMGGTATIGHVRSSSDHHFSQT 1031
Query: 214 VGFGPNSHARSNFAE 258
+G S ARS +
Sbjct: 1032 LGSASPSTARSRITK 1046
>sp|P36269|GGT5_HUMAN Gamma-glutamyltransferase 5 precursor (Gamma-glutamyltranspeptidase
5) (Gamma-glutamyltransferase-like activity 1) (GGT-rel)
[Contains: Gamma-glutamyltransferase 5 heavy chain;
Gamma-glutamyltransferase 5 light chain]
Length = 586
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 161 CPAGANPTPLPPTSDKILDAPSRTVPKSPIS*LISVMSPMLSTNR 27
CP G+ TP P + D++ AP R P P S M P + N+
Sbjct: 435 CPWGSGTTPSPVSGDRVGGAPGRCWPPVPGERSPSSMVPSILINK 479
>sp|Q61495|DSG1A_MOUSE Desmoglein-1 alpha precursor (Dsg1-alpha) (Desmoglein-1) (Desmosomal
glycoprotein I) (DG1) (DGI)
Length = 1057
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 73 IGDLGTVLDGASRILSL-VGGRGVGLAPAGHGHASHSDASFDPQFAQKVGFGPNSHARSN 249
+G +G + G+S ++S +G G GL G H +S D F+Q VG S ARS
Sbjct: 989 LGGVGGI--GSSGLVSTTMGASGTGLNMGGTATIGHMRSSSDHHFSQTVGSASPSMARSR 1046
Query: 250 FAE 258
+
Sbjct: 1047 ITK 1049
>sp|Q5GF60|MATK_IRISA Maturase K (Intron maturase)
Length = 522
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Frame = -1
Query: 355 NANMF*FHKLSNFHFNNFIKFISVYVLHDLVELQQNLSVHDYWDRIQ------------L 212
N N F H +NF +++F + LVE+ +L + Y+++ + +
Sbjct: 81 NKNRFVSHHHNNFCYSHFYSQVISQGFAILVEIPFSLRLXSYFEKKEIPXSHNLRSIHSI 140
Query: 211 FEQIEDQMKHLNDSHDHVQPVLIQH 137
F +ED++ HLN +V +LI H
Sbjct: 141 FPFLEDKLLHLN----YVSDILIPH 161
>sp|Q62565|SRY_MUSSI Sex-determining region Y protein (Testis-determining factor)
Length = 311
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 274 HDLVELQQNLSVHDYWDRIQLFEQIEDQMKHLNDSHDHVQ 155
HD + QQ HD+ + Q F + Q + +D H H Q
Sbjct: 162 HDHHQQQQQQQFHDHHQQKQQFHDHQQQQQQFHDHHHHQQ 201
>sp|Q7TSF1|DSG1B_MOUSE Desmoglein-1 beta precursor (Dsg1-beta) (Desmoglein-5)
Length = 1060
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 73 IGDLGTVLDGASRILSL-VGGRGVGLAPAGHGHASHSDASFDPQFAQKVGFGPNSHARSN 249
+G +G + G+S ++S +G G GL G H +S D F+Q +G + ARS
Sbjct: 992 LGGVGGI--GSSGLVSTTMGAAGTGLNMGGTATIGHMRSSSDHHFSQTIGSASPNMARSR 1049
Query: 250 FAE 258
+
Sbjct: 1050 ITK 1052
>sp|Q9NZT2|OGFR_HUMAN Opioid growth factor receptor (OGFr) (Zeta-type opioid receptor)
(7-60 protein)
Length = 677
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 61 ISQEIGDLGTVLDGASRILSLVGGRGVGLAPAGHGHASHSDASFDPQFAQKVG 219
+ + GD V G ++ L+L G AP+GH A HS+ + + G
Sbjct: 461 VDEGAGDSAAVASGGAQTLALAGSP----APSGHPKAGHSENGVEEDTEGRTG 509
>sp|P37232|PPARA_XENLA Peroxisome proliferator-activated receptor alpha (PPAR-alpha)
Length = 474
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 31 FVESIGDITDISQEIGDLGTVLDGAS 108
F++ I DI DI+Q IGD G+ GAS
Sbjct: 31 FLQDIVDIQDITQTIGDDGSTPFGAS 56
>sp|Q12816|TROP_HUMAN Trophinin (MAGE-D3 antigen)
Length = 1387
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 76 GDLGTVLDGASRILSLVGGRGVGLAPAGHGHASHSDASFDPQFAQKVGFGPNSHARSNF 252
G LGT S + + G G GL+ + G S +ASFD + +GFG S+ + F
Sbjct: 1247 GGLGTNASFGSTLGTSAGFSG-GLSTSD-GFGSRPNASFDRGLSTIIGFGSGSNTSTGF 1303
>sp|P20048|SEC59_YEAST Dolichol kinase
Length = 519
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 202 IEDQMKHLNDSHDHVQPVLIQHLYLRLATKSLML 101
IE Q++ D DH P++I +LYL + +L
Sbjct: 380 IELQLRRFADDRDHSGPLIISYLYLLFGISTPLL 413
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,710,017
Number of Sequences: 369166
Number of extensions: 691502
Number of successful extensions: 3172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3158
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)