Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N08
(351 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GKQ8|DSG1_CANFA Desmoglein-1 precursor (Desmosomal gly... 30 2.2
sp|Q12816|TROP_HUMAN Trophinin (MAGE-D3 antigen) 29 3.8
sp|Q8Z3Z9|KDUI_SALTI 4-deoxy-L-threo-5-hexosulose-uronate k... 28 5.0
sp|P46842|APA_MYCLE Alanine and proline-rich secreted prote... 28 5.0
sp|O76819|HMDH_AGRIP 3-hydroxy-3-methylglutaryl-coenzyme A ... 28 5.0
sp|Q8ZM98|KDUI_SALTY 4-deoxy-L-threo-5-hexosulose-uronate k... 28 5.0
sp|P36269|GGT5_HUMAN Gamma-glutamyltransferase 5 precursor ... 28 6.5
sp|P37232|PPARA_XENLA Peroxisome proliferator-activated rec... 28 6.5
sp|P0A554|DXS_MYCTU 1-deoxy-D-xylulose-5-phosphate synthase... 28 8.5
sp|Q6NRG6|SAS6_XENLA Spindle assembly abnormal protein 6 ho... 28 8.5
>sp|Q9GKQ8|DSG1_CANFA Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1) (DGI)
Length = 1054
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +3
Query: 30 VESIGDITDISQEIGDLGTVLDGASRILSLVGGRGVGLAPAEHGHASHSDASFDPKFAQK 209
V S I+ IS +G V G + SL GG G+ + H +S D F+Q
Sbjct: 972 VVSGSGISGISGLVGSAMGVSGGGMAMNSLGGGGGLSSSMGGTATIGHVRSSSDHHFSQT 1031
Query: 210 VGFGPNSHARSNFAE 254
+G S ARS +
Sbjct: 1032 LGSASPSTARSRITK 1046
>sp|Q12816|TROP_HUMAN Trophinin (MAGE-D3 antigen)
Length = 1387
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 72 GDLGTVLDGASRILSLVGGRGVGLAPAEHGHASHSDASFDPKFAQKVGFGPNSHARSNF 248
G LGT S + + G G GL+ ++ G S +ASFD + +GFG S+ + F
Sbjct: 1247 GGLGTNASFGSTLGTSAGFSG-GLSTSD-GFGSRPNASFDRGLSTIIGFGSGSNTSTGF 1303
>sp|Q8Z3Z9|KDUI_SALTI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
(5-keto-4-deoxyuronate isomerase) (DKI isomerase)
Length = 278
Score = 28.5 bits (62), Expect = 5.0
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Frame = +3
Query: 3 IFLVSQFLFVES------IGDITDISQEI---GDLGTVLDGASRILSL-------VGGRG 134
IF+ ++ V S +G I +S + G++G L G SR+L +GG G
Sbjct: 29 IFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQL-GVSRLLDRRELGVINIGGAG 87
Query: 135 VGLAPAEHGHASHSDASFDPKFAQKVGFGPNSHARS-----NFAEVQRGHATRK 281
+ + H DA + K A+++ F N +R N A + T+K
Sbjct: 88 AIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKK 141
>sp|P46842|APA_MYCLE Alanine and proline-rich secreted protein apa precursor (Antigen
43L) (Fibronectin attachment protein) (FAP-L)
Length = 287
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -3
Query: 160 PCSAGANPTPLPPTSDKILDAPSRTV----PKSPIS 65
P +A A+P PLPP++ +P++ + P +P+S
Sbjct: 34 PAAANADPAPLPPSTATAAPSPAQEIITPLPGAPVS 69
>sp|O76819|HMDH_AGRIP 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 833
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 60 SQEIGDLG--TVLDGASRILSLVGGRGVGLAPAEH 158
S E+G +G T+L G L ++G +G G PAE+
Sbjct: 743 SLEVGTVGGGTILTGQGACLDILGVKGAGARPAEN 777
>sp|Q8ZM98|KDUI_SALTY 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
(5-keto-4-deoxyuronate isomerase) (DKI isomerase)
Length = 278
Score = 28.5 bits (62), Expect = 5.0
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Frame = +3
Query: 3 IFLVSQFLFVES------IGDITDISQEI---GDLGTVLDGASRILSL-------VGGRG 134
IF+ ++ V S +G I +S + G++G L G SR+L +GG G
Sbjct: 29 IFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQL-GVSRLLDRRELGVINIGGAG 87
Query: 135 VGLAPAEHGHASHSDASFDPKFAQKVGFGPNSHARS-----NFAEVQRGHATRK 281
+ + H DA + K A+++ F N +R N A + T+K
Sbjct: 88 AIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKK 141
>sp|P36269|GGT5_HUMAN Gamma-glutamyltransferase 5 precursor (Gamma-glutamyltranspeptidase
5) (Gamma-glutamyltransferase-like activity 1) (GGT-rel)
[Contains: Gamma-glutamyltransferase 5 heavy chain;
Gamma-glutamyltransferase 5 light chain]
Length = 586
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 157 CSAGANPTPLPPTSDKILDAPSRTVPKSPIS*LISVMSPMLSTNR 23
C G+ TP P + D++ AP R P P S M P + N+
Sbjct: 435 CPWGSGTTPSPVSGDRVGGAPGRCWPPVPGERSPSSMVPSILINK 479
>sp|P37232|PPARA_XENLA Peroxisome proliferator-activated receptor alpha (PPAR-alpha)
Length = 474
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 27 FVESIGDITDISQEIGDLGTVLDGAS 104
F++ I DI DI+Q IGD G+ GAS
Sbjct: 31 FLQDIVDIQDITQTIGDDGSTPFGAS 56
>sp|P0A554|DXS_MYCTU 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
sp|P0A555|DXS_MYCBO 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 638
Score = 27.7 bits (60), Expect = 8.5
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 96 GASRILSLVGGRGVGLAPAEHGHAS--HSDASFDPKFAQ--KVGFGPNSHARSNFAEVQR 263
GA I+ +V +G+G PAE A HS DP Q KV GP A F++
Sbjct: 269 GAPVIVHVVTRKGMGYPPAEADQAEQMHSTVPIDPATGQATKVA-GPGWTA--TFSDALI 325
Query: 264 GHATRKR 284
G+A ++R
Sbjct: 326 GYAQKRR 332
>sp|Q6NRG6|SAS6_XENLA Spindle assembly abnormal protein 6 homolog
Length = 668
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 226 LGPNPTF*ANLGSNEASE*LA*PCSAGANPTPLPPTSDKILDAPS 92
L P F AN+ N++ L CS P P P TS IL + S
Sbjct: 567 LNPQAAFKANVRFNQSPTAL---CSPAVEPRPAPSTSTPILPSTS 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,500,412
Number of Sequences: 369166
Number of extensions: 635171
Number of successful extensions: 2212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)