Planaria EST Database

DrC_00302

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00302
         (692 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   335   7e-92
sp|Q8T6A5|TBA1_APLCA  Tubulin alpha-1 chain                       334   2e-91
sp|P18288|TBAT_ONCMY  Tubulin alpha chain, testis-specific        333   3e-91
sp|P68369|TBA1_MOUSE  Tubulin alpha-1 chain (Alpha-tubulin 1...   333   3e-91
sp|P02552|TBA1_CHICK  Tubulin alpha-1 chain                       333   3e-91
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       333   3e-91
sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain               333   3e-91
sp|P52273|TBA_BOMMO  Tubulin alpha chain                          333   3e-91
sp|P02550|TBA_PIG  Tubulin alpha chain                            332   6e-91
sp|P68361|TBA1_CRIGR  Tubulin alpha-1 chain (Alpha-tubulin 1...   332   7e-91

>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  335 bits (859), Expect = 7e-92
 Identities = 159/160 (99%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440

>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
          Length = 451

 Score =  334 bits (856), Expect = 2e-91
 Identities = 158/160 (98%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440

>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
          Length = 450

 Score =  333 bits (854), Expect = 3e-91
 Identities = 158/160 (98%), Positives = 159/160 (99%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440

>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
           M-alpha-1)
 sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
 sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
 sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
          Length = 451

 Score =  333 bits (854), Expect = 3e-91
 Identities = 157/160 (98%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440

>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
          Length = 412

 Score =  333 bits (854), Expect = 3e-91
 Identities = 157/160 (98%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRT
Sbjct: 242 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT 301

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 302 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 362 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401

>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  333 bits (853), Expect = 3e-91
 Identities = 158/159 (99%), Positives = 159/159 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 478
           KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439

>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score =  333 bits (853), Expect = 3e-91
 Identities = 157/160 (98%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440

>sp|P52273|TBA_BOMMO Tubulin alpha chain
          Length = 450

 Score =  333 bits (853), Expect = 3e-91
 Identities = 158/159 (99%), Positives = 159/159 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 478
           KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439

>sp|P02550|TBA_PIG Tubulin alpha chain
          Length = 451

 Score =  332 bits (851), Expect = 6e-91
 Identities = 156/160 (97%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440

>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
 sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
           K-alpha-1)
 sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
           M-alpha-2)
 sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
 sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 451

 Score =  332 bits (850), Expect = 7e-91
 Identities = 156/160 (97%), Positives = 160/160 (100%)
 Frame = +2

Query: 2   AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
           AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRS 340

Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
           IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400

Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
           KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,472,287
Number of Sequences: 369166
Number of extensions: 1350892
Number of successful extensions: 3819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3618
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00302

  1. Dr_sW_008_C12
  2. Dr_sW_015_J24
  3. Dr_sW_027_M09
  4. Dr_sW_023_F16