Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C12
(583 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 335 5e-92
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 334 1e-91
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 333 2e-91
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 333 2e-91
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 333 2e-91
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 333 2e-91
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 333 2e-91
sp|P52273|TBA_BOMMO Tubulin alpha chain 333 2e-91
sp|P02550|TBA_PIG Tubulin alpha chain 332 4e-91
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 332 5e-91
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 335 bits (859), Expect = 5e-92
Identities = 159/160 (99%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 334 bits (856), Expect = 1e-91
Identities = 158/160 (98%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 333 bits (854), Expect = 2e-91
Identities = 158/160 (98%), Positives = 159/160 (99%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 333 bits (854), Expect = 2e-91
Identities = 157/160 (98%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 333 bits (854), Expect = 2e-91
Identities = 157/160 (98%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRT
Sbjct: 242 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT 301
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 302 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 362 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 333 bits (853), Expect = 2e-91
Identities = 158/159 (99%), Positives = 159/159 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 478
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 333 bits (853), Expect = 2e-91
Identities = 157/160 (98%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 333 bits (853), Expect = 2e-91
Identities = 158/159 (99%), Positives = 159/159 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 478
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 332 bits (851), Expect = 4e-91
Identities = 156/160 (97%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRT
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 332 bits (850), Expect = 5e-91
Identities = 156/160 (97%), Positives = 160/160 (100%)
Frame = +2
Query: 2 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 181
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+
Sbjct: 281 AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRS 340
Query: 182 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 361
IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 400
Query: 362 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 481
KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,111,920
Number of Sequences: 369166
Number of extensions: 1120503
Number of successful extensions: 3486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3285
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)