Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_F16
(527 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 220 2e-57
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 220 2e-57
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 220 2e-57
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 220 2e-57
sp|P02553|TBA_LYTPI Tubulin alpha chain 220 2e-57
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 219 3e-57
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 219 3e-57
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 218 5e-57
sp|P02550|TBA_PIG Tubulin alpha chain 218 7e-57
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 218 9e-57
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 220 bits (560), Expect = 2e-57
Identities = 104/105 (99%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 220 bits (560), Expect = 2e-57
Identities = 104/105 (99%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 220 bits (560), Expect = 2e-57
Identities = 104/105 (99%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 220 bits (560), Expect = 2e-57
Identities = 104/105 (99%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
Length = 161
Score = 220 bits (560), Expect = 2e-57
Identities = 104/105 (99%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 46 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 105
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 106 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 150
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 219 bits (558), Expect = 3e-57
Identities = 103/105 (98%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 219 bits (558), Expect = 3e-57
Identities = 103/105 (98%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 297 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 356
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 357 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 218 bits (556), Expect = 5e-57
Identities = 103/104 (99%), Positives = 104/104 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 313
DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 218 bits (555), Expect = 7e-57
Identities = 102/105 (97%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKRTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 218 bits (554), Expect = 9e-57
Identities = 102/105 (97%), Positives = 105/105 (100%)
Frame = +2
Query: 2 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 181
KTKR+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 182 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 316
DLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,648,933
Number of Sequences: 369166
Number of extensions: 938648
Number of successful extensions: 2743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2570
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)