Planaria EST Database

DrC_00297

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00297
         (525 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5J309|MATK_FROFL  Maturase K (Intron maturase)                 32   0.93 
sp|P44940|Y929_HAEIN  Hypothetical protein HI0929                  32   1.2  
sp|Q14315|FLNC_HUMAN  Filamin-C (Gamma-filamin) (Filamin-2) ...    32   1.2  
sp|Q66HC7|FA48A_RAT  Protein FAM48A                                31   1.6  
sp|Q7TT00|FA48A_MOUSE  Protein FAM48A (p38-interacting prote...    30   2.7  
sp|Q9P7Q8|YFV6_SCHPO  Hypothetical protein C1834.06c in chro...    30   3.5  
sp|Q8ENP5|ENO_OCEIH  Enolase (2-phosphoglycerate dehydratase...    30   3.5  
sp|Q8M9X3|CEMA_CHAGL  Chloroplast envelope membrane protein        30   4.6  
sp|P21333|FLNA_HUMAN  Filamin-A (Alpha-filamin) (Filamin-1) ...    29   6.0  
sp|P06270|RPOA_MARPO  DNA-directed RNA polymerase alpha chai...    29   6.0  

>sp|Q5J309|MATK_FROFL Maturase K (Intron maturase)
          Length = 505

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
 Frame = -3

Query: 523 SFTSRITLHKFIMLENKNLNKGFL*MFRYTTKNFEFFFLMFDSSVREISAPLFRLKFPYD 344
           ++TSRIT  + I    K   + FL ++ +    +E+FF+    S+R  S+ L    F   
Sbjct: 188 NWTSRITSKESISFLKKRNRRLFLFLYNFYVCEYEYFFV----SLRNQSSYLRSTSFGAL 243

Query: 343 SFRFNFTFDNKKRKAVIRSAYYRVLWYIQIFSPFPFITTSRKN---ASINKSLILEFWNF 173
             R +F    K +  V    +  +LW+ +   PFP     +     AS   SL++  W +
Sbjct: 244 LERIHFY--GKFKYLVKVKDFAVILWFFK--EPFPHYVRYQGKALLASKGTSLLMHKWKY 299

Query: 172 F 170
           +
Sbjct: 300 Y 300

>sp|P44940|Y929_HAEIN Hypothetical protein HI0929
          Length = 393

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 161 YGGEEIPKFQYQALVDTSILPGSSYKWKWTEDLD 262
           Y G  +  F+Y A   TS+L  +  +W+W E ++
Sbjct: 108 YDGNNLKMFEYNADTPTSLLEAAVVQWQWLEQIE 141

>sp|Q14315|FLNC_HUMAN Filamin-C (Gamma-filamin) (Filamin-2) (Protein FLNc)
            (Actin-binding-like protein) (ABP-L) (ABP-280-like
            protein)
          Length = 2725

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +2

Query: 5    VEICVSWQDAHDGFIPEQSVIANGKCYVARAKHNGE------FIPGKLVEGHKNVFICYG 166
            VE  +  +DA +G +  Q +   GK   A  + NG+      ++P   + G   + I YG
Sbjct: 1560 VEFTIDARDAGEGLLTVQILGPEGKPKKANIRDNGDGTYAVSYLPD--MSGRYTITIKYG 1617

Query: 167  GEEIP 181
            G+EIP
Sbjct: 1618 GDEIP 1622

>sp|Q66HC7|FA48A_RAT Protein FAM48A
          Length = 530

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 149 VFICYGGEEIPKFQYQAL--VDTSILPGSSYKWKWTEDLDVPKNAIIGGSDNGLPLFIVK 322
           VF C GG +  K +   L  +   +  G    WK  E+ D   +     +D+    FI+ 
Sbjct: 338 VFECEGGNQYQKTKLTILQSLGDPLYYGKIQPWKADEESDSQMSPSHSSADDHSNWFIIG 397

Query: 323 SEIKAETVVGKFQ 361
           S+  AE VV ++Q
Sbjct: 398 SKTDAERVVNQYQ 410

>sp|Q7TT00|FA48A_MOUSE Protein FAM48A (p38-interacting protein) (p38IP)
          Length = 530

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 149 VFICYGGEEIPKFQYQAL--VDTSILPGSSYKWKWTEDLDVPKNAIIGGSDNGLPLFIVK 322
           VF C GG +  K +   L  +   +  G    WK  E+ D   +     +D+    F++ 
Sbjct: 338 VFECEGGNQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSNWFVIG 397

Query: 323 SEIKAETVVGKFQ 361
           S+  AE VV ++Q
Sbjct: 398 SKTDAERVVNQYQ 410

>sp|Q9P7Q8|YFV6_SCHPO Hypothetical protein C1834.06c in chromosome I
          Length = 329

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = -3

Query: 286 AYYRVLWYIQI-FSPFPFITTSRKNASINKSLI--LEFWNFFTSITDKNIFMTLD*FARY 116
           +YYR   Y ++ F+    +    ++ ++N+ L+   +FW FF+ I   +  M  D F+ +
Sbjct: 128 SYYR---YQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTF 184

Query: 115 KFTIMFCPSYITFSICY--DRLFRNKTIM 35
           K  ++   S +   I Y  D  F+  T++
Sbjct: 185 KSILLNHKSQVAEFISYHFDEFFKQYTVL 213

>sp|Q8ENP5|ENO_OCEIH Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate
           hydro-lyase)
          Length = 429

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 316 NKKRKAVIRSAYYRVLWYIQIFSPFPFITTSRKNASINKSLILEFWNFFTSITDK 152
           N K + V+RS+   V WY ++ S +P I       SI   L    W+ F  +TD+
Sbjct: 255 NLKGEGVVRSSEEMVDWYEEMISKYPII-------SIEDGLDENDWDGFKILTDR 302

>sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein
          Length = 472

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 436 TTKNFEFFFLMF----DSSVREISAPLFRLKFPYDSFRFNFTFDNKK 308
           T KNF F FL +    +  +  + A L  LK   D + +NF F NKK
Sbjct: 140 TNKNFHFDFLKYKIKYERQLAWVEAVLEDLKIWKDFYLYNFDFFNKK 186

>sp|P21333|FLNA_HUMAN Filamin-A (Alpha-filamin) (Filamin-1) (Endothelial actin-binding
            protein) (Actin-binding protein 280) (ABP-280) (Nonmuscle
            filamin)
          Length = 2647

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +2

Query: 5    VEICVSWQDAHDGFIPEQSVIANGKCYVARAKHNGE------FIPGKLVEGHKNVFICYG 166
            VE  +  +DA +G +  Q     GK      + N +      ++P   V G   + I YG
Sbjct: 1566 VEFTIDAKDAGEGLLAVQITDPEGKPKKTHIQDNHDGTYTVAYVPD--VTGRYTILIKYG 1623

Query: 167  GEEIPKFQYQ 196
            G+EIP   Y+
Sbjct: 1624 GDEIPFSPYR 1633

>sp|P06270|RPOA_MARPO DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded RNA
           polymerase alpha subunit) (RNA polymerase alpha subunit)
          Length = 340

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 245 WTEDLDVPKNAIIGGSDNGLPLFI--VKSEIKAETVVGKFQPEQGCAYFPYGGIEHEKEE 418
           WT+    PK A+   S N + LFI  + SE K +    +   E   +YFP+  +  + E+
Sbjct: 204 WTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKTNESNMSYFPFQSVSLDIEK 263

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,786,468
Number of Sequences: 369166
Number of extensions: 1378289
Number of successful extensions: 3364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00297

  1. Dr_sW_008_B13
  2. Dr_sW_027_J23