Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B13
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P44940|Y929_HAEIN Hypothetical protein HI0929 32 1.2
sp|Q14315|FLNC_HUMAN Filamin-C (Gamma-filamin) (Filamin-2) ... 32 1.2
sp|Q5J309|MATK_FROFL Maturase K (Intron maturase) 31 1.5
sp|Q66HC7|FA48A_RAT Protein FAM48A 31 1.5
sp|Q7TT00|FA48A_MOUSE Protein FAM48A (p38-interacting prote... 30 2.6
sp|Q9P7Q8|YFV6_SCHPO Hypothetical protein C1834.06c in chro... 30 3.4
sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein 30 3.4
sp|P21333|FLNA_HUMAN Filamin-A (Alpha-filamin) (Filamin-1) ... 29 5.8
sp|P06270|RPOA_MARPO DNA-directed RNA polymerase alpha chai... 29 5.8
sp|P36779|VE2_HPV07 Regulatory protein E2 29 5.8
>sp|P44940|Y929_HAEIN Hypothetical protein HI0929
Length = 393
Score = 31.6 bits (70), Expect = 1.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 161 YGGEEIPKFQYQALVDTSILPGSSYKWKWTEDLD 262
Y G + F+Y A TS+L + +W+W E ++
Sbjct: 108 YDGNNLKMFEYNADTPTSLLEAAVVQWQWLEQIE 141
>sp|Q14315|FLNC_HUMAN Filamin-C (Gamma-filamin) (Filamin-2) (Protein FLNc)
(Actin-binding-like protein) (ABP-L) (ABP-280-like
protein)
Length = 2725
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +2
Query: 5 VEICVSWQDAHDGFIPEQSVIANGKCYVARAKHNGE------FIPGKLVEGHKNVFICYG 166
VE + +DA +G + Q + GK A + NG+ ++P + G + I YG
Sbjct: 1560 VEFTIDARDAGEGLLTVQILGPEGKPKKANIRDNGDGTYAVSYLPD--MSGRYTITIKYG 1617
Query: 167 GEEIP 181
G+EIP
Sbjct: 1618 GDEIP 1622
>sp|Q5J309|MATK_FROFL Maturase K (Intron maturase)
Length = 505
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = -1
Query: 517 TSRITLHKFIMLENKNLNKGFL*MFRYTTKNFEFFFLMFDSSVREISAPLFRLKFPYDSF 338
TSRIT + I K + FL ++ + +E+FF+ S+R S+ L F
Sbjct: 190 TSRITSKESISFLKKRNRRLFLFLYNFYVCEYEYFFV----SLRNQSSYLRSTSFGALLE 245
Query: 337 RFNFTFDNKKRKTVIRSAYYRVLWYIQIFSPFPFITTSRKN---ASINKSLILEFWNFF 170
R +F K + V + +LW+ + PFP + AS SL++ W ++
Sbjct: 246 RIHFY--GKFKYLVKVKDFAVILWFFK--EPFPHYVRYQGKALLASKGTSLLMHKWKYY 300
>sp|Q66HC7|FA48A_RAT Protein FAM48A
Length = 530
Score = 31.2 bits (69), Expect = 1.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 149 VFICYGGEEIPKFQYQAL--VDTSILPGSSYKWKWTEDLDVPKNAIIGGSDNGLPLFIVK 322
VF C GG + K + L + + G WK E+ D + +D+ FI+
Sbjct: 338 VFECEGGNQYQKTKLTILQSLGDPLYYGKIQPWKADEESDSQMSPSHSSADDHSNWFIIG 397
Query: 323 SEIKAETVVGKFQ 361
S+ AE VV ++Q
Sbjct: 398 SKTDAERVVNQYQ 410
>sp|Q7TT00|FA48A_MOUSE Protein FAM48A (p38-interacting protein) (p38IP)
Length = 530
Score = 30.4 bits (67), Expect = 2.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 149 VFICYGGEEIPKFQYQAL--VDTSILPGSSYKWKWTEDLDVPKNAIIGGSDNGLPLFIVK 322
VF C GG + K + L + + G WK E+ D + +D+ F++
Sbjct: 338 VFECEGGNQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSNWFVIG 397
Query: 323 SEIKAETVVGKFQ 361
S+ AE VV ++Q
Sbjct: 398 SKTDAERVVNQYQ 410
>sp|Q9P7Q8|YFV6_SCHPO Hypothetical protein C1834.06c in chromosome I
Length = 329
Score = 30.0 bits (66), Expect = 3.4
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = -1
Query: 286 AYYRVLWYIQI-FSPFPFITTSRKNASINKSLI--LEFWNFFTSITDKNIFMTLD*FARY 116
+YYR Y ++ F+ + ++ ++N+ L+ +FW FF+ I + M D F+ +
Sbjct: 128 SYYR---YQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTF 184
Query: 115 KFTIMFCPSYITFSICY--DRLFRNKTIM 35
K ++ S + I Y D F+ T++
Sbjct: 185 KSILLNHKSQVAEFISYHFDEFFKQYTVL 213
>sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein
Length = 472
Score = 30.0 bits (66), Expect = 3.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -1
Query: 436 TTKNFEFFFLMF----DSSVREISAPLFRLKFPYDSFRFNFTFDNKKRKTVIRSAYY 278
T KNF F FL + + + + A L LK D + +NF F NKK R ++
Sbjct: 140 TNKNFHFDFLKYKIKYERQLAWVEAVLEDLKIWKDFYLYNFDFFNKKINNTRRFFFF 196
>sp|P21333|FLNA_HUMAN Filamin-A (Alpha-filamin) (Filamin-1) (Endothelial actin-binding
protein) (Actin-binding protein 280) (ABP-280) (Nonmuscle
filamin)
Length = 2647
Score = 29.3 bits (64), Expect = 5.8
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +2
Query: 5 VEICVSWQDAHDGFIPEQSVIANGKCYVARAKHNGE------FIPGKLVEGHKNVFICYG 166
VE + +DA +G + Q GK + N + ++P V G + I YG
Sbjct: 1566 VEFTIDAKDAGEGLLAVQITDPEGKPKKTHIQDNHDGTYTVAYVPD--VTGRYTILIKYG 1623
Query: 167 GEEIPKFQYQ 196
G+EIP Y+
Sbjct: 1624 GDEIPFSPYR 1633
>sp|P06270|RPOA_MARPO DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded RNA
polymerase alpha subunit) (RNA polymerase alpha subunit)
Length = 340
Score = 29.3 bits (64), Expect = 5.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 245 WTEDLDVPKNAIIGGSDNGLPLFI--VKSEIKAETVVGKFQPEQGCAYFPYGGIEHEKEE 418
WT+ PK A+ S N + LFI + SE K + + E +YFP+ + + E+
Sbjct: 204 WTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKTNESNMSYFPFQSVSLDIEK 263
>sp|P36779|VE2_HPV07 Regulatory protein E2
Length = 375
Score = 29.3 bits (64), Expect = 5.8
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +2
Query: 92 RAKHNGEFIPGKLVEGHKNVFICYGGEEIPKFQYQALVDTSILPGSSYKWKWTEDLDVPK 271
R G P +EG N C F+Y+ + + SS W+WT + K
Sbjct: 287 RNSGGGHSTPIIQLEGDANCLKC--------FRYRLTKVSHLYTNSSTTWRWTTESRTNK 338
Query: 272 NAII 283
NAII
Sbjct: 339 NAII 342
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,242,679
Number of Sequences: 369166
Number of extensions: 1343427
Number of successful extensions: 3351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)