Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J23
(266 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein 30 2.3
sp|P25247|POL2_TORVR RNA2 polyprotein (P2) [Contains: X3 pr... 28 8.7
>sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein
Length = 472
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 177 TTKNFEFFFLMF----DSSVREISAPLFRLKFPYDSFRFNFTFDNKK 49
T KNF F FL + + + + A L LK D + +NF F NKK
Sbjct: 140 TNKNFHFDFLKYKIKYERQLAWVEAVLEDLKIWKDFYLYNFDFFNKK 186
>sp|P25247|POL2_TORVR RNA2 polyprotein (P2) [Contains: X3 protein; X4 protein; Movement
protein (MP); Coat protein (CP)]
Length = 1882
Score = 27.7 bits (60), Expect = 8.7
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -1
Query: 203 KVFYKCFVTQQRISNSSFSCSIPPYGK*AHPCSG*NFPTTVSALISLLTIKRGRPLSDPP 24
K+ +CF+ S CS+ +G+ G +FP +++L+ I L+D P
Sbjct: 1377 KLRLRCFIPTNIFCGHSMMCSLDAFGRYDSNVLGASFPVKLASLLPTEVIS----LADGP 1432
Query: 23 II 18
++
Sbjct: 1433 VV 1434
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,937,146
Number of Sequences: 369166
Number of extensions: 527118
Number of successful extensions: 1133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)