Planaria EST Database

DrC_00295

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00295
         (370 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96DN5|WDR67_HUMAN  WD-repeat protein 67                        39   0.004
sp|Q62871|DYI2_RAT  Dynein intermediate chain 2, cytosolic (...    35   0.041
sp|Q13409|DYI2_HUMAN  Dynein intermediate chain 2, cytosolic...    34   0.092
sp|O88487|DYI2_MOUSE  Dynein intermediate chain 2, cytosolic...    34   0.092
sp|Q16959|DYI2_ANTCR  Dynein intermediate chain 2, ciliary         34   0.12 
sp|Q96EP0|RNF31_HUMAN  RING finger protein 31 (Zinc in-betwe...    33   0.16 
sp|Q8BU03|PWP2_MOUSE  Periodic tryptophan protein 2 homolog        33   0.20 
sp|P27766|DYI3_CHLRE  Dynein, 70 kDa intermediate chain, fla...    33   0.27 
sp|Q15269|PWP2_HUMAN  Periodic tryptophan protein 2 homolog        32   0.60 
sp|Q63100|DYI1_RAT  Dynein intermediate chain 1, cytosolic (...    31   0.78 

>sp|Q96DN5|WDR67_HUMAN WD-repeat protein 67
          Length = 1066

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
 Frame = +3

Query: 21  NEGAVEVWNLQLS--TLDPLIVENIC------PEFIVLTSVTFTETGECLIVGDSDGALH 176
           N+ + ++W+ + S  T D +IV  I       P+ +   +V F  TG+CLI GD  G ++
Sbjct: 8   NKESGKIWHRKPSPATRDGIIVNIIHNTSDYHPKVLRFLNVAFDGTGDCLIAGDHQGNIY 67

Query: 177 TFALRNMPPVPKNQTEALDRTIQSCIA 257
            F L        N+   + RT Q+C A
Sbjct: 68  VFDLHG------NRFNLVQRTAQACTA 88

>sp|Q62871|DYI2_RAT Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic
           dynein intermediate chain 2)
          Length = 638

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +3

Query: 6   IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
           +FACV+  G +++WNL   T  P    ++      L  V +T +G  + VGDS+G +  +
Sbjct: 539 LFACVDGMGRLDLWNLNNDTEVPTASISVEGN-PALNRVRWTHSGREIAVGDSEGQIVIY 597

Query: 183 ALRNMPPVPKNQTEA-LDRTIQSCIASQ 263
            +     VP+N   A   RT+    AS+
Sbjct: 598 DVGEQIAVPRNDEWARFGRTLAEINASR 625

>sp|Q13409|DYI2_HUMAN Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic
           dynein intermediate chain 2)
          Length = 638

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
           +FACV+  G +++WNL   T  P    ++      L  V +T +G  + VGDS+G +  +
Sbjct: 539 LFACVDGMGRLDLWNLNNDTEVPTASISVEGN-PALNRVRWTHSGREIAVGDSEGQIVIY 597

Query: 183 ALRNMPPVPKN 215
            +     VP+N
Sbjct: 598 DVGEQIAVPRN 608

>sp|O88487|DYI2_MOUSE Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic
           dynein intermediate chain 2)
          Length = 612

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
           +FACV+  G +++WNL   T  P    ++      L  V +T +G  + VGDS+G +  +
Sbjct: 513 LFACVDGMGRLDLWNLNNDTEVPTASISVEGN-PALNRVRWTHSGREIAVGDSEGQIVIY 571

Query: 183 ALRNMPPVPKN 215
            +     VP+N
Sbjct: 572 DVGEQIAVPRN 582

>sp|Q16959|DYI2_ANTCR Dynein intermediate chain 2, ciliary
          Length = 702

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
 Frame = +3

Query: 6   IFACVN-EGAVEVWNLQLSTLDPLIVENICPEFIV------LTSVTFTETGECLIVGDSD 164
           +FA V  +G V V++L L+  +P     IC + +V      LT +TF      ++VGD  
Sbjct: 597 VFAAVTADGKVHVFDLNLNKYEP-----ICEQAVVQKKKTKLTHITFNPNFPIVLVGDDR 651

Query: 165 GALHTFALR-NMPPVPKNQTEA 227
           G + +  L  N+  VPK++  A
Sbjct: 652 GYVSSLKLSPNLRKVPKDKKGA 673

>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
           ubiquitin-associated domain protein)
          Length = 1072

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +3

Query: 24  EGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALH 176
           E  VE   LQLS  DPL+ E I P  +   SV  +  G C + G + G LH
Sbjct: 179 EDKVEDDMLQLSEFDPLLRE-IAPGPLTTPSVPGSTPGPCFLCGSAPGTLH 228

>sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog
          Length = 919

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 21  NEGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTFAL 188
           ++G V+VWN    TL       +      +T VTFT TG  ++    DG +  F L
Sbjct: 393 DDGKVKVWN----TLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDL 444

>sp|P27766|DYI3_CHLRE Dynein, 70 kDa intermediate chain, flagellar outer arm (IC69)
           (IC70)
          Length = 567

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 3   VIFACVNEGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
           V F    +GA++VW+L     +P +   +    + LT+    E+G  + VG SDG     
Sbjct: 421 VFFTIKMDGAMDVWDLYYKHNEPTLTVQVSD--LALTAFAVQESGGTVAVGTSDGCTSVL 478

Query: 183 AL 188
            L
Sbjct: 479 QL 480

>sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog
          Length = 919

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 21  NEGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTFAL 188
           ++G V+VWN    TL              +T VTFT TG  ++    DG +  F L
Sbjct: 393 DDGKVKVWN----TLSGFCFVTFTEHSSGVTGVTFTATGYVVVTSSMDGTVRAFDL 444

>sp|Q63100|DYI1_RAT Dynein intermediate chain 1, cytosolic (DH IC-1) (Cytoplasmic
           dynein intermediate chain 1)
          Length = 643

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +3

Query: 6   IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
           +FACV+  G +++WNL   T  P     I   +  L  V + + G+ + VGDS+G +  +
Sbjct: 545 LFACVDGMGRLDLWNLNSDTEVPTASVAIEGAY-ALNRVRWAQGGKEVAVGDSEGRIWIY 603

Query: 183 ALRNMPPVPKNQTEALDRTIQSCIASQLQS 272
            +  +     ++     RT+    A++  S
Sbjct: 604 DVGELAVPHNDEWTRFARTLVEIRANRADS 633

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,980,652
Number of Sequences: 369166
Number of extensions: 760661
Number of successful extensions: 2225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2224
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00295

  1. Dr_sW_008_B09
  2. Dr_sW_006_O24