Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_O24
(320 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96DN5|WDR67_HUMAN WD-repeat protein 67 37 0.011
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 31 1.0
sp|P32330|YKM1_YEAST Hypothetical WD repeat-containing prot... 30 1.7
sp|Q6DDI6|WDR67_XENLA WD-repeat protein 67 29 3.8
sp|Q62635|MUC2_RAT Mucin-2 precursor (Intestinal mucin 2) 28 5.0
sp|Q03059|CLAT_MOUSE Choline O-acetyltransferase (CHOACTase... 28 8.5
>sp|Q96DN5|WDR67_HUMAN WD-repeat protein 67
Length = 1066
Score = 37.4 bits (85), Expect = 0.011
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 43 PEFIVLTSVTFTETGECLIVGDSDGALHTFALRNMPPVPKNQTEALDRTIQSCIA 207
P+ + +V F TG+CLI GD G ++ F L N+ + RT Q+C A
Sbjct: 40 PKVLRFLNVAFDGTGDCLIAGDHQGNIYVFDLHG------NRFNLVQRTAQACTA 88
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 1 QLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALH 126
QLS DPL+ E I P + SV + G C + G + G LH
Sbjct: 188 QLSEFDPLLRE-IAPGPLTTPSVPGSTPGPCFLCGSAPGTLH 228
>sp|P32330|YKM1_YEAST Hypothetical WD repeat-containing protein YKL121w
Length = 852
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = +1
Query: 70 TFTETGECLIVGDSDGALHTFALRNMPPVPKNQTEALDRTIQSCIASQLQ 219
TF+ G+ +++G DG+LH + + N PV +++ ++++ + A+ L+
Sbjct: 180 TFSHDGKYMVIGCKDGSLHLWKVIN-SPVKRSEMGRSEKSVSASRANSLK 228
>sp|Q6DDI6|WDR67_XENLA WD-repeat protein 67
Length = 1089
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 73 FTETGECLIVGDSDGALHTFALRNMPPVPKNQTEALDRTIQSCIA 207
F G+C + GD G ++ F L +N+ + + +T+Q+C A
Sbjct: 50 FDSAGDCFLAGDHLGNVYMFNLN------RNRFDLVQKTMQACTA 88
>sp|Q62635|MUC2_RAT Mucin-2 precursor (Intestinal mucin 2)
Length = 1513
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 229 EISSVIDLQYTIGLFCPR-LLFDSLVLVACFSMQMCEEHRHYH 104
E+SS+ + Y G FCP ++D + C + C H H
Sbjct: 313 EVSSLCEEHYMDGCFCPEGTVYDDITGSGCIPVSQCHCKLHGH 355
>sp|Q03059|CLAT_MOUSE Choline O-acetyltransferase (CHOACTase) (Choline acetylase) (ChAT)
Length = 641
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 238 YRKEISSVIDLQYTIGLFCPRLLFDSLVLVACFSMQMCEEHRHYHQQLG 92
Y K + V+ T G+ C FD +VLV C EH H G
Sbjct: 315 YDKSLQFVVGRDGTCGVVCEHSPFDGIVLV------QCTEHLLKHMMTG 357
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,856,556
Number of Sequences: 369166
Number of extensions: 642066
Number of successful extensions: 1874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)