Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B09
(370 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96DN5|WDR67_HUMAN WD-repeat protein 67 39 0.004
sp|Q62871|DYI2_RAT Dynein intermediate chain 2, cytosolic (... 35 0.041
sp|Q13409|DYI2_HUMAN Dynein intermediate chain 2, cytosolic... 34 0.092
sp|O88487|DYI2_MOUSE Dynein intermediate chain 2, cytosolic... 34 0.092
sp|Q16959|DYI2_ANTCR Dynein intermediate chain 2, ciliary 34 0.12
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 33 0.16
sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog 33 0.20
sp|P27766|DYI3_CHLRE Dynein, 70 kDa intermediate chain, fla... 33 0.27
sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog 32 0.60
sp|Q63100|DYI1_RAT Dynein intermediate chain 1, cytosolic (... 31 0.78
>sp|Q96DN5|WDR67_HUMAN WD-repeat protein 67
Length = 1066
Score = 38.9 bits (89), Expect = 0.004
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +3
Query: 21 NEGAVEVWNLQLS--TLDPLIVENIC------PEFIVLTSVTFTETGECLIVGDSDGALH 176
N+ + ++W+ + S T D +IV I P+ + +V F TG+CLI GD G ++
Sbjct: 8 NKESGKIWHRKPSPATRDGIIVNIIHNTSDYHPKVLRFLNVAFDGTGDCLIAGDHQGNIY 67
Query: 177 TFALRNMPPVPKNQTEALDRTIQSCIA 257
F L N+ + RT Q+C A
Sbjct: 68 VFDLHG------NRFNLVQRTAQACTA 88
>sp|Q62871|DYI2_RAT Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic
dynein intermediate chain 2)
Length = 638
Score = 35.4 bits (80), Expect = 0.041
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +3
Query: 6 IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
+FACV+ G +++WNL T P ++ L V +T +G + VGDS+G + +
Sbjct: 539 LFACVDGMGRLDLWNLNNDTEVPTASISVEGN-PALNRVRWTHSGREIAVGDSEGQIVIY 597
Query: 183 ALRNMPPVPKNQTEA-LDRTIQSCIASQ 263
+ VP+N A RT+ AS+
Sbjct: 598 DVGEQIAVPRNDEWARFGRTLAEINASR 625
>sp|Q13409|DYI2_HUMAN Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic
dynein intermediate chain 2)
Length = 638
Score = 34.3 bits (77), Expect = 0.092
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 6 IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
+FACV+ G +++WNL T P ++ L V +T +G + VGDS+G + +
Sbjct: 539 LFACVDGMGRLDLWNLNNDTEVPTASISVEGN-PALNRVRWTHSGREIAVGDSEGQIVIY 597
Query: 183 ALRNMPPVPKN 215
+ VP+N
Sbjct: 598 DVGEQIAVPRN 608
>sp|O88487|DYI2_MOUSE Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic
dynein intermediate chain 2)
Length = 612
Score = 34.3 bits (77), Expect = 0.092
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 6 IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
+FACV+ G +++WNL T P ++ L V +T +G + VGDS+G + +
Sbjct: 513 LFACVDGMGRLDLWNLNNDTEVPTASISVEGN-PALNRVRWTHSGREIAVGDSEGQIVIY 571
Query: 183 ALRNMPPVPKN 215
+ VP+N
Sbjct: 572 DVGEQIAVPRN 582
>sp|Q16959|DYI2_ANTCR Dynein intermediate chain 2, ciliary
Length = 702
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +3
Query: 6 IFACVN-EGAVEVWNLQLSTLDPLIVENICPEFIV------LTSVTFTETGECLIVGDSD 164
+FA V +G V V++L L+ +P IC + +V LT +TF ++VGD
Sbjct: 597 VFAAVTADGKVHVFDLNLNKYEP-----ICEQAVVQKKKTKLTHITFNPNFPIVLVGDDR 651
Query: 165 GALHTFALR-NMPPVPKNQTEA 227
G + + L N+ VPK++ A
Sbjct: 652 GYVSSLKLSPNLRKVPKDKKGA 673
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = +3
Query: 24 EGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALH 176
E VE LQLS DPL+ E I P + SV + G C + G + G LH
Sbjct: 179 EDKVEDDMLQLSEFDPLLRE-IAPGPLTTPSVPGSTPGPCFLCGSAPGTLH 228
>sp|Q8BU03|PWP2_MOUSE Periodic tryptophan protein 2 homolog
Length = 919
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 21 NEGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTFAL 188
++G V+VWN TL + +T VTFT TG ++ DG + F L
Sbjct: 393 DDGKVKVWN----TLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDL 444
>sp|P27766|DYI3_CHLRE Dynein, 70 kDa intermediate chain, flagellar outer arm (IC69)
(IC70)
Length = 567
Score = 32.7 bits (73), Expect = 0.27
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 3 VIFACVNEGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
V F +GA++VW+L +P + + + LT+ E+G + VG SDG
Sbjct: 421 VFFTIKMDGAMDVWDLYYKHNEPTLTVQVSD--LALTAFAVQESGGTVAVGTSDGCTSVL 478
Query: 183 AL 188
L
Sbjct: 479 QL 480
>sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog
Length = 919
Score = 31.6 bits (70), Expect = 0.60
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 21 NEGAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTFAL 188
++G V+VWN TL +T VTFT TG ++ DG + F L
Sbjct: 393 DDGKVKVWN----TLSGFCFVTFTEHSSGVTGVTFTATGYVVVTSSMDGTVRAFDL 444
>sp|Q63100|DYI1_RAT Dynein intermediate chain 1, cytosolic (DH IC-1) (Cytoplasmic
dynein intermediate chain 1)
Length = 643
Score = 31.2 bits (69), Expect = 0.78
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 6 IFACVNE-GAVEVWNLQLSTLDPLIVENICPEFIVLTSVTFTETGECLIVGDSDGALHTF 182
+FACV+ G +++WNL T P I + L V + + G+ + VGDS+G + +
Sbjct: 545 LFACVDGMGRLDLWNLNSDTEVPTASVAIEGAY-ALNRVRWAQGGKEVAVGDSEGRIWIY 603
Query: 183 ALRNMPPVPKNQTEALDRTIQSCIASQLQS 272
+ + ++ RT+ A++ S
Sbjct: 604 DVGELAVPHNDEWTRFARTLVEIRANRADS 633
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,980,652
Number of Sequences: 369166
Number of extensions: 760661
Number of successful extensions: 2225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2224
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)