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• EST
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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00290
         (843 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04052|RPB1_DROME  DNA-directed RNA polymerase II largest...    43   0.001
sp|Q9M1G9|EXTN2_ARATH  Extensin-2 precursor (AtExt2) (Cell w...    42   0.002
sp|P08775|RPB1_MOUSE  DNA-directed RNA polymerase II largest...    41   0.005
sp|P24928|RPB1_HUMAN  DNA-directed RNA polymerase II largest...    41   0.005
sp|P11414|RPB1_CRIGR  DNA-directed RNA polymerase II largest...    41   0.005
sp|P24152|EXTN_SORBI  Extensin precursor (Proline-rich glyco...    40   0.011
sp|P14248|RPB1_PLAFD  DNA-directed RNA polymerase II largest...    39   0.014
sp|Q38913|EXTN1_ARATH  Extensin-1 precursor (AtExt1) (AtExt4)      39   0.014
sp|P36594|RPB1_SCHPO  DNA-directed RNA polymerase II largest...    36   0.12 
sp|P16356|RPB1_CAEEL  DNA-directed RNA polymerase II largest...    36   0.12 

>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II largest subunit
          Length = 1887

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 14/200 (7%)
 Frame = +3

Query: 156  APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAVPKYS--------IGQILNPYIK 311
            +P YS    T P     SP      P    T   Y A P+YS         G   +P   
Sbjct: 1703 SPCYS---PTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSP 1759

Query: 312  EVTPGPSDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGP 491
              +P    YD S  +      SP++             +PA  +Y           P+ P
Sbjct: 1760 TYSPPSPSYDGSPGSPQYTPGSPQY-------------SPASPKYS----------PTSP 1796

Query: 492  KYSVGQYLHYDKSKEGPGPADYKVGSP------DLFLTASPKYTMGSGAQMPDSRLLTPS 653
             YS     H   ++  P  + Y   SP       ++  +S KY+  S    P +R  +P+
Sbjct: 1797 LYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPT 1856

Query: 654  PAHYKHEMVTSHLPGSPAFT 713
               Y     + + P SPA++
Sbjct: 1857 SPMYSPTAPSHYSPTSPAYS 1876

>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
            glycoprotein 1) (HRGP1)
          Length = 743

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 60/247 (24%), Positives = 84/247 (34%), Gaps = 6/247 (2%)
 Frame = +3

Query: 42   YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 221
            Y  P  P    +++P P Y +P+           V+ K+P         P     SP P 
Sbjct: 418  YKSPPPPYV--YSSPPPPYYSPS---------PKVYYKSPP--------PPYVYSSPPPP 458

Query: 222  AYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKY 401
             Y P  K+ +      P Y       PY    +P P  Y  S     V++  P       
Sbjct: 459  YYSPSPKVYYKS--PPPPYVYSSPPPPYY---SPSPKVYYKSPPPPYVYSSPPPPYY--- 510

Query: 402  LTELTSNTTPAPNEY-KLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSPDL 578
                    +P+P  Y K PPP      P  P YS    +HY   K  P P  Y    P  
Sbjct: 511  --------SPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVHY---KSPPPPYVYS-SPPPP 558

Query: 579  FLTASPKYTMGSGA-----QMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKG 743
            + + SPK    S         P     +PSP  Y       ++  SP       +SP   
Sbjct: 559  YYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYVYSSPP---PPYYSPSPK 615

Query: 744  EHFREPP 764
             +++ PP
Sbjct: 616  VYYKSPP 622

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 49/206 (23%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
 Frame = +3

Query: 207 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 344
           SP P  Y P  K+ +                Y   PK        PY+    P P+   +
Sbjct: 304 SPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPTYSPS 363

Query: 345 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 521
            K +    +  P ++   Y +      +P+P  EYK PPP      P  P YS    ++Y
Sbjct: 364 PKVDYK--SPPPPYV---YSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYSPSPKVYY 418

Query: 522 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGA-----QMPDSRLLTPSPAHYKHEMVTS 686
              K  P P  Y    P  + + SPK    S         P     +PSP  Y       
Sbjct: 419 ---KSPPPPYVYS-SPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPP 474

Query: 687 HLPGSPAFTMGIIHSPYKGEHFREPP 764
           ++  SP       +SP    +++ PP
Sbjct: 475 YVYSSPP---PPYYSPSPKVYYKSPP 497

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 45/192 (23%), Positives = 63/192 (32%), Gaps = 15/192 (7%)
 Frame = +3

Query: 207 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 344
           SP P  Y P  K+ +                Y   PK        PY+    P P    +
Sbjct: 79  SPPPPTYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPS 138

Query: 345 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 521
            K +    +  P ++   Y +      +P+P  EYK PPP      P  P YS    + Y
Sbjct: 139 PKVDYK--SPPPPYV---YSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVDY 193

Query: 522 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGS 701
              K  P P  Y    P  + + SPK    S    P     +P P +Y       +    
Sbjct: 194 ---KSPPPPYVYS-SPPPPYYSPSPKVEYKS--PPPPYVYSSPPPPYYSPSPKVDYKSPP 247

Query: 702 PAFTMGIIHSPY 737
           P +       PY
Sbjct: 248 PPYVYSSPPPPY 259

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
 Frame = +3

Query: 426 TPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSPDLFLTASPKY 602
           TPAP  EYK PPP      P  P YS    + Y   K  P P  Y    P  + + SPK 
Sbjct: 61  TPAPEVEYKSPPPPYVYSSPPPPTYSPSPKVDY---KSPPPPYVYS-SPPPPYYSPSPKV 116

Query: 603 TMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPY-----KGEHFREPP 764
              S    P     +P P +Y       +    P +       PY     K E+   PP
Sbjct: 117 DYKS--PPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPP 173

 Score = 36.6 bits (83), Expect = 0.089
 Identities = 52/209 (24%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
 Frame = +3

Query: 42   YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPA------------YSFGLKT 185
            Y  P  P    +++P P Y +P+           VH K+P             YS   K 
Sbjct: 543  YKSPPPPYV--YSSPPPPYYSPS---------PKVHYKSPPPPYVYNSPPPPYYSPSPKV 591

Query: 186  F-----PHNQERSPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTS- 347
            +     P     SP P  Y P  K+ +      P Y       PY    +P P  Y  S 
Sbjct: 592  YYKSPPPPYVYSSPPPPYYSPSPKVYYKS--PPPPYVYSSPPPPYY---SPSPKVYYKSP 646

Query: 348  -----KANNVVWTKSPEHIMGKYLTELTSNTTPAPNE-YKLPPPDITSDKPSGPKYSVGQ 509
                   +  V+ KSP H             +P+P   YK PPP    + P  P YS   
Sbjct: 647  PPPYYSPSPKVYYKSPPHPHVCVCPPPPPCYSPSPKVVYKSPPPPYVYNSPPPPYYSPSP 706

Query: 510  YLHYDKSKEGPGPADYKVGSPDLFLTASP 596
             ++Y    + P P  Y   SP +   + P
Sbjct: 707  KVYY----KSPPPPSYYSPSPKVEYKSPP 731

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 45/192 (23%), Positives = 62/192 (32%), Gaps = 15/192 (7%)
 Frame = +3

Query: 207 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 344
           SP P  Y P  K+ +                Y   PK        PY+    P P     
Sbjct: 154 SPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPY---Y 210

Query: 345 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 521
           S +  V +   P   +  Y +      +P+P  +YK PPP      P  P YS    + Y
Sbjct: 211 SPSPKVEYKSPPPPYV--YSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDY 268

Query: 522 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGS 701
              K  P P  Y    P  + + SPK    S    P     +P P +Y       +    
Sbjct: 269 ---KSPPPPYVYS-SPPPPYYSPSPKVDYKS--PPPPYVYSSPPPPYYSPSPKVDYKSPP 322

Query: 702 PAFTMGIIHSPY 737
           P +       PY
Sbjct: 323 PPYVYSSPPPPY 334

>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
 Frame = +3

Query: 156  APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 329
            +P+YS    T P     SP  +   P    T   Y    P YS      +P     +P  
Sbjct: 1689 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745

Query: 330  SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
             +Y  +  N    + S       Y     + T  +PN     P   P   S  P+ P YS
Sbjct: 1746 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805

Query: 501  VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
                 +  +S    P    Y   SP  +   SPKYT  S +  P S   TP+   Y    
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPASPKYS-PT 1863

Query: 678  VTSHLPGSPAFT 713
               + P SP ++
Sbjct: 1864 SPKYSPTSPKYS 1875

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
 Frame = +3

Query: 156  APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
            +P+YS    T P+    SP  +   P    T   Y    P YS      P     TP   
Sbjct: 1766 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 1816

Query: 333  DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
             Y  S  +    + S      KY        TP    Y    P+ T   P+ PKYS    
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PASPKYSP--- 1862

Query: 513  LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 692
                  K  P    Y   SP  +   +PKY+  S    P S + TP+   Y     T + 
Sbjct: 1863 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 1917

Query: 693  PGSPAFT 713
            P SP ++
Sbjct: 1918 PTSPKYS 1924

>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
 Frame = +3

Query: 156  APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 329
            +P+YS    T P     SP  +   P    T   Y    P YS      +P     +P  
Sbjct: 1689 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745

Query: 330  SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
             +Y  +  N    + S       Y     + T  +PN     P   P   S  P+ P YS
Sbjct: 1746 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805

Query: 501  VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
                 +  +S    P    Y   SP  +   SPKYT  S +  P S   TP+   Y    
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPTSPKYS-PT 1863

Query: 678  VTSHLPGSPAFT 713
               + P SP ++
Sbjct: 1864 SPKYSPTSPKYS 1875

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
 Frame = +3

Query: 156  APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
            +P+YS    T P+    SP  +   P    T   Y    P YS      P     TP   
Sbjct: 1766 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 1816

Query: 333  DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
             Y  S  +    + S      KY        TP    Y    P+ T   P+ PKYS    
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PTSPKYSP--- 1862

Query: 513  LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 692
                  K  P    Y   SP  +   +PKY+  S    P S + TP+   Y     T + 
Sbjct: 1863 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 1917

Query: 693  PGSPAFT 713
            P SP ++
Sbjct: 1918 PTSPKYS 1924

>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 467

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
 Frame = +3

Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 329
           +P+YS    T P     SP  +   P    T   Y    P YS      +P     +P  
Sbjct: 186 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 242

Query: 330 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
            +Y  +  N    + S       Y     + T  +PN     P   P   S  P+ P YS
Sbjct: 243 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 302

Query: 501 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
                +  +S    P    Y   SP  +   SPKYT  S +  P S   TP+   Y    
Sbjct: 303 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPTSPKYS-PT 360

Query: 678 VTSHLPGSPAFT 713
              + P SP ++
Sbjct: 361 SPKYSPTSPKYS 372

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
 Frame = +3

Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
           +P+YS    T P+    SP  +   P    T   Y    P YS      P     TP   
Sbjct: 263 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 313

Query: 333 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
            Y  S  +    + S      KY        TP    Y    P+ T   P+ PKYS    
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PTSPKYSP--- 359

Query: 513 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 692
                 K  P    Y   SP  +   +PKY+  S    P S + TP+   Y     T + 
Sbjct: 360 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 414

Query: 693 PGSPAFT 713
           P SP ++
Sbjct: 415 PTSPKYS 421

>sp|P24152|EXTN_SORBI Extensin precursor (Proline-rich glycoprotein)
          Length = 283

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 62/245 (25%), Positives = 75/245 (30%), Gaps = 11/245 (4%)
 Frame = +3

Query: 33  GYPYTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAP-AYSFGLKTFPHNQERS 209
           GYP   P+ P         P  G     G K       H   P  Y+   K  P      
Sbjct: 33  GYPTPTPKPPAKGPKPEKPPTKGH----GHKPEKPPKEHKPTPPTYTPSPKPTPPPATPK 88

Query: 210 PGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSK------ANNVVWT 371
           P P  Y P  K     Y   PK S      P  K     P  Y T K          V+T
Sbjct: 89  PTPPTYTPSPKPKSPVYPPPPKASTPPTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYT 148

Query: 372 KSPEHIMGKYLTELTSNTTPAPN---EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGP 542
            SP+  + K  T   +     PN       PP    S KP   K +   Y    K  + P
Sbjct: 149 PSPKPPVTKPPTPKPTPPVYTPNPKPPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPK-P 207

Query: 543 GPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTS-HLPGSPAFTMG 719
            P  Y   +P    T  P  T       P +      P  YK     S   P  P +T  
Sbjct: 208 SPPTY-TPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPPTYKPAPKPSPPAPTPPTYTPP 266

Query: 720 IIHSP 734
           + H+P
Sbjct: 267 VSHTP 271

>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest subunit
          Length = 2452

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 57/233 (24%), Positives = 87/233 (37%), Gaps = 15/233 (6%)
 Frame = +3

Query: 81   NPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPAA--YGPDTKLTHH 254
            N  P+     L   K ++  + +V +P  +            SP P    + P  ++ H+
Sbjct: 2186 NQQPVDATNLLFSPKNNNIMNYNVFSPKPNINNNVIQSPNIYSPNPMLDIFSPKPQINHN 2245

Query: 255  GYDAVPKYS----IGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKYLTELTSN 422
             Y   P YS         N Y    +P          N+ +   S  ++M    +  +  
Sbjct: 2246 IYS--PSYSPTSPTYNANNAYYSPTSP-------KNQNDQMNVNSQYNVMSPVYSVTSPK 2296

Query: 423  TTPAPNEYKLPPPDI--TSDK--PSGPKYSVGQYLHYDKS-KEGPGPADYKVGSPDLFLT 587
             +P   +Y    P    TS K  P+ PKYS     +   S K  P    Y   SP     
Sbjct: 2297 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNI 2356

Query: 588  ASPKYT---MGSGAQMPDSRLLT-PSPAHYKHEMVTSHLPGSPAFTMGIIHSP 734
            ASP Y+   + S    P S   +  SP + K  +V +H P SPA+   I+ SP
Sbjct: 2357 ASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQPMSPAY---ILQSP 2406

>sp|Q38913|EXTN1_ARATH Extensin-1 precursor (AtExt1) (AtExt4)
          Length = 373

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 57/255 (22%), Positives = 79/255 (30%), Gaps = 13/255 (5%)
 Frame = +3

Query: 42  YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 221
           Y  P  P+  ++ +P P+Y +P                 P Y       P  +  SP P 
Sbjct: 71  YKSPPPPV--KYYSPPPVYKSPP---------------PPVYK---SPPPPVKHYSPPPV 110

Query: 222 AYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKY 401
              P   + H  Y   P Y       P +K  +P P              KSP   +  Y
Sbjct: 111 YKSPPPPVKH--YSPPPVYKSPP---PPVKHYSPPPV------------YKSPPPPVKHY 153

Query: 402 LTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVG----------QYLHYDKSKEGPGPA 551
                  + P P +Y  PPP   S  P    YS            +Y       + P P 
Sbjct: 154 SPPPVYKSPPPPVKYYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPP 213

Query: 552 DYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMG---I 722
                 P ++ +  P     S   +  S    P P HY    V  H P  P        +
Sbjct: 214 VKHYSPPPVYKSPPPPVKYYSPPPVYKS---PPPPVHYSPPPVVYHSPPPPVHYSPPPVV 270

Query: 723 IHSPYKGEHFREPPI 767
            HSP    H+  PP+
Sbjct: 271 YHSPPPPVHYSPPPV 285

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 54/245 (22%), Positives = 80/245 (32%), Gaps = 4/245 (1%)
 Frame = +3

Query: 42  YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 221
           Y  P  P+  ++ +P P+Y +P     K +    V+   P         P  +  SP P 
Sbjct: 159 YKSPPPPV--KYYSPPPVYKSPP-PPVKHYSPPPVYKSPP---------PPVKYYSPPPV 206

Query: 222 AYGPDTKLTHHGYDAV---PKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIM 392
              P   + H+    V   P   +     P + +  P P  Y       VV+   P  + 
Sbjct: 207 YKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVHYSPPP---VVYHSPPPPV- 262

Query: 393 GKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSP 572
                    + +P P  Y  PPP +    P    +S    +HY      P P  Y    P
Sbjct: 263 ---------HYSPPPVVYHSPPPPVHYSPPPVVYHSPPPPVHY-----SPPPVVYHSPPP 308

Query: 573 DLFLTASP-KYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKGEH 749
            +  +  P  Y      +        P P HY    V  H P  P       H PY    
Sbjct: 309 PVHYSPPPVVYHSPPPPKKHYEYKSPPPPVHYSPPTV-YHSPPPPVHHYSPPHQPYL--- 364

Query: 750 FREPP 764
           ++ PP
Sbjct: 365 YKSPP 369

>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1)
          Length = 1752

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 44/192 (22%), Positives = 66/192 (34%), Gaps = 4/192 (2%)
 Frame = +3

Query: 150  VKAPAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGP 329
            V++P Y     T P +   SPG     P    +  GY   P Y       P     +P  
Sbjct: 1534 VQSPGY-----TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM------PSSPSYSPTS 1582

Query: 330  SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
              Y  +  +    + S       Y     S +  +P+     P   P   S  P+ P YS
Sbjct: 1583 PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642

Query: 501  VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
                 +   S    P    Y   SP  +   SP Y+  S +  P S   +P+   Y    
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PT 1700

Query: 678  VTSHLPGSPAFT 713
              S+ P SP+++
Sbjct: 1701 SPSYSPTSPSYS 1712

>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II largest subunit
          Length = 1852

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 4/212 (1%)
 Frame = +3

Query: 156  APAYSFGLKTF-PHNQERSPGPAAYGPDTKLTHHGYDAVPKYS-IGQILNPYIKEVTPGP 329
            +P+YS    ++ P +   SP    Y P T  T+      P YS      +P     +P  
Sbjct: 1651 SPSYSPSSPSYSPSSPSYSPSSPRYSP-TSPTYS--PTSPTYSPTSPTYSPTSPTYSPTS 1707

Query: 330  SDYDTSKANNVVWTKSPEHIMGKYLTELTSNT-TPAPNEYKLPPPDITSDKPSGPKYSVG 506
              Y++    +     SP++         TS + +P   +Y    P  +   PS P Y+  
Sbjct: 1708 PSYESGGGYS---PSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYS---PSSPTYTPS 1761

Query: 507  QYLHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTS 686
               +   S  G     Y   SP  +   SP YT  S    P S   TPSP+  +      
Sbjct: 1762 SPTYNPTSPRGFSSPQYSPTSPT-YSPTSPSYTPSSPQYSPTSPTYTPSPSE-QPGTSAQ 1819

Query: 687  HLPGSPAFT-MGIIHSPYKGEHFREPPIED*N 779
            + P SP ++     +SP    +    P  D N
Sbjct: 1820 YSPTSPTYSPSSPTYSPASPSYSPSSPTYDPN 1851

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,830,013
Number of Sequences: 369166
Number of extensions: 2581494
Number of successful extensions: 6075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5956
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_008_A08
2. Dr_sW_026_H03
3. Dr_sW_017_A05