Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_A08
(839 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04052|RPB1_DROME DNA-directed RNA polymerase II largest... 43 0.001
sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell w... 42 0.002
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest... 41 0.005
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest... 41 0.005
sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest... 41 0.005
sp|P24152|EXTN_SORBI Extensin precursor (Proline-rich glyco... 40 0.010
sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest... 39 0.014
sp|Q38913|EXTN1_ARATH Extensin-1 precursor (AtExt1) (AtExt4) 39 0.014
sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II largest... 36 0.12
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II largest... 36 0.15
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II largest subunit
Length = 1887
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 14/200 (7%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAVPKYS--------IGQILNPYIK 311
+P YS T P SP P T Y A P+YS G +P
Sbjct: 1703 SPCYS---PTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSP 1759
Query: 312 EVTPGPSDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGP 491
+P YD S + SP++ +PA +Y P+ P
Sbjct: 1760 TYSPPSPSYDGSPGSPQYTPGSPQY-------------SPASPKYS----------PTSP 1796
Query: 492 KYSVGQYLHYDKSKEGPGPADYKVGSP------DLFLTASPKYTMGSGAQMPDSRLLTPS 653
YS H ++ P + Y SP ++ +S KY+ S P +R +P+
Sbjct: 1797 LYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPT 1856
Query: 654 PAHYKHEMVTSHLPGSPAFT 713
Y + + P SPA++
Sbjct: 1857 SPMYSPTAPSHYSPTSPAYS 1876
>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
glycoprotein 1) (HRGP1)
Length = 743
Score = 42.0 bits (97), Expect = 0.002
Identities = 60/247 (24%), Positives = 84/247 (34%), Gaps = 6/247 (2%)
Frame = +3
Query: 42 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 221
Y P P +++P P Y +P+ V+ K+P P SP P
Sbjct: 418 YKSPPPPYV--YSSPPPPYYSPS---------PKVYYKSPP--------PPYVYSSPPPP 458
Query: 222 AYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKY 401
Y P K+ + P Y PY +P P Y S V++ P
Sbjct: 459 YYSPSPKVYYKS--PPPPYVYSSPPPPYY---SPSPKVYYKSPPPPYVYSSPPPPYY--- 510
Query: 402 LTELTSNTTPAPNEY-KLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSPDL 578
+P+P Y K PPP P P YS +HY K P P Y P
Sbjct: 511 --------SPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVHY---KSPPPPYVYS-SPPPP 558
Query: 579 FLTASPKYTMGSGA-----QMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKG 743
+ + SPK S P +PSP Y ++ SP +SP
Sbjct: 559 YYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYVYSSPP---PPYYSPSPK 615
Query: 744 EHFREPP 764
+++ PP
Sbjct: 616 VYYKSPP 622
Score = 40.4 bits (93), Expect = 0.006
Identities = 49/206 (23%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
Frame = +3
Query: 207 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 344
SP P Y P K+ + Y PK PY+ P P+ +
Sbjct: 304 SPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPTYSPS 363
Query: 345 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 521
K + + P ++ Y + +P+P EYK PPP P P YS ++Y
Sbjct: 364 PKVDYK--SPPPPYV---YSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYSPSPKVYY 418
Query: 522 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGA-----QMPDSRLLTPSPAHYKHEMVTS 686
K P P Y P + + SPK S P +PSP Y
Sbjct: 419 ---KSPPPPYVYS-SPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPP 474
Query: 687 HLPGSPAFTMGIIHSPYKGEHFREPP 764
++ SP +SP +++ PP
Sbjct: 475 YVYSSPP---PPYYSPSPKVYYKSPP 497
Score = 38.1 bits (87), Expect = 0.030
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 1/121 (0%)
Frame = +3
Query: 426 TPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSPDLFLTASPKY 602
TPAP EYK PPP P P YS + Y K P P Y P + + SPK
Sbjct: 61 TPAPEVEYKSPPPPYVYSSPPPPTYSPSPKVDY---KSPPPPYVYS-SPPPPYYSPSPKV 116
Query: 603 TMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKGEHFREPPIEIKYL 782
S P +P P +Y + P + PY + P +E K
Sbjct: 117 DYKS--PPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPY---YSPSPKVEYKSP 171
Query: 783 P 785
P
Sbjct: 172 P 172
Score = 38.1 bits (87), Expect = 0.030
Identities = 48/208 (23%), Positives = 69/208 (33%), Gaps = 15/208 (7%)
Frame = +3
Query: 207 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 344
SP P Y P K+ + Y PK PY+ P P +
Sbjct: 79 SPPPPTYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPS 138
Query: 345 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 521
K + + P ++ Y + +P+P EYK PPP P P YS + Y
Sbjct: 139 PKVDYK--SPPPPYV---YSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVDY 193
Query: 522 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGS 701
K P P Y P + + SPK S P +P P +Y +
Sbjct: 194 ---KSPPPPYVYS-SPPPPYYSPSPKVEYKS--PPPPYVYSSPPPPYYSPSPKVDYKSPP 247
Query: 702 PAFTMGIIHSPYKGEHFREPPIEIKYLP 785
P + PY + P ++ K P
Sbjct: 248 PPYVYSSPPPPY---YSPSPKVDYKSPP 272
Score = 36.6 bits (83), Expect = 0.089
Identities = 47/195 (24%), Positives = 67/195 (34%), Gaps = 2/195 (1%)
Frame = +3
Query: 207 SPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPS-DYDTSKANNVVWTKSPE 383
SP P Y P K+ + P Y PY +P P DY + V + P
Sbjct: 204 SPPPPYYSPSPKVEYKS--PPPPYVYSSPPPPYY---SPSPKVDYKSPPPPYVYSSPPPP 258
Query: 384 HIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYK 560
+ +P+P +YK PPP P P YS + Y K P P Y
Sbjct: 259 YY------------SPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDY---KSPPPPYVYS 303
Query: 561 VGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYK 740
P + + SPK S P +P P +Y + P + + SP
Sbjct: 304 -SPPPPYYSPSPKVDYKS--PPPPYVYSSPPPPYYSPSPKVDYKSPPPPY---VYSSPPP 357
Query: 741 GEHFREPPIEIKYLP 785
+ P ++ K P
Sbjct: 358 PTYSPSPKVDYKSPP 372
Score = 36.6 bits (83), Expect = 0.089
Identities = 52/209 (24%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
Frame = +3
Query: 42 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPA------------YSFGLKT 185
Y P P +++P P Y +P+ VH K+P YS K
Sbjct: 543 YKSPPPPYV--YSSPPPPYYSPS---------PKVHYKSPPPPYVYNSPPPPYYSPSPKV 591
Query: 186 F-----PHNQERSPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTS- 347
+ P SP P Y P K+ + P Y PY +P P Y S
Sbjct: 592 YYKSPPPPYVYSSPPPPYYSPSPKVYYKS--PPPPYVYSSPPPPYY---SPSPKVYYKSP 646
Query: 348 -----KANNVVWTKSPEHIMGKYLTELTSNTTPAPNE-YKLPPPDITSDKPSGPKYSVGQ 509
+ V+ KSP H +P+P YK PPP + P P YS
Sbjct: 647 PPPYYSPSPKVYYKSPPHPHVCVCPPPPPCYSPSPKVVYKSPPPPYVYNSPPPPYYSPSP 706
Query: 510 YLHYDKSKEGPGPADYKVGSPDLFLTASP 596
++Y + P P Y SP + + P
Sbjct: 707 KVYY----KSPPPPSYYSPSPKVEYKSPP 731
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 40.8 bits (94), Expect = 0.005
Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 329
+P+YS T P SP + P T Y P YS +P +P
Sbjct: 1689 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745
Query: 330 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
+Y + N + S Y + T +PN P P S P+ P YS
Sbjct: 1746 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805
Query: 501 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
+ +S P Y SP + SPKYT S + P S TP+ Y
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPASPKYS-PT 1863
Query: 678 VTSHLPGSPAFT 713
+ P SP ++
Sbjct: 1864 SPKYSPTSPKYS 1875
Score = 37.7 bits (86), Expect = 0.040
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
+P+YS T P+ SP + P T Y P YS P TP
Sbjct: 1766 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 1816
Query: 333 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
Y S + + S KY TP Y P+ T P+ PKYS
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PASPKYSP--- 1862
Query: 513 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 692
K P Y SP + +PKY+ S P S + TP+ Y T +
Sbjct: 1863 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 1917
Query: 693 PGSPAFT 713
P SP ++
Sbjct: 1918 PTSPKYS 1924
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 40.8 bits (94), Expect = 0.005
Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 329
+P+YS T P SP + P T Y P YS +P +P
Sbjct: 1689 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745
Query: 330 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
+Y + N + S Y + T +PN P P S P+ P YS
Sbjct: 1746 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805
Query: 501 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
+ +S P Y SP + SPKYT S + P S TP+ Y
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPTSPKYS-PT 1863
Query: 678 VTSHLPGSPAFT 713
+ P SP ++
Sbjct: 1864 SPKYSPTSPKYS 1875
Score = 37.7 bits (86), Expect = 0.040
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
+P+YS T P+ SP + P T Y P YS P TP
Sbjct: 1766 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 1816
Query: 333 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
Y S + + S KY TP Y P+ T P+ PKYS
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PTSPKYSP--- 1862
Query: 513 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 692
K P Y SP + +PKY+ S P S + TP+ Y T +
Sbjct: 1863 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 1917
Query: 693 PGSPAFT 713
P SP ++
Sbjct: 1918 PTSPKYS 1924
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 467
Score = 40.8 bits (94), Expect = 0.005
Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 329
+P+YS T P SP + P T Y P YS +P +P
Sbjct: 186 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 242
Query: 330 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
+Y + N + S Y + T +PN P P S P+ P YS
Sbjct: 243 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 302
Query: 501 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
+ +S P Y SP + SPKYT S + P S TP+ Y
Sbjct: 303 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPTSPKYS-PT 360
Query: 678 VTSHLPGSPAFT 713
+ P SP ++
Sbjct: 361 SPKYSPTSPKYS 372
Score = 37.7 bits (86), Expect = 0.040
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
+P+YS T P+ SP + P T Y P YS P TP
Sbjct: 263 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 313
Query: 333 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
Y S + + S KY TP Y P+ T P+ PKYS
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PTSPKYSP--- 359
Query: 513 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 692
K P Y SP + +PKY+ S P S + TP+ Y T +
Sbjct: 360 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 414
Query: 693 PGSPAFT 713
P SP ++
Sbjct: 415 PTSPKYS 421
>sp|P24152|EXTN_SORBI Extensin precursor (Proline-rich glycoprotein)
Length = 283
Score = 39.7 bits (91), Expect = 0.010
Identities = 62/245 (25%), Positives = 75/245 (30%), Gaps = 11/245 (4%)
Frame = +3
Query: 33 GYPYTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAP-AYSFGLKTFPHNQERS 209
GYP P+ P P G G K H P Y+ K P
Sbjct: 33 GYPTPTPKPPAKGPKPEKPPTKGH----GHKPEKPPKEHKPTPPTYTPSPKPTPPPATPK 88
Query: 210 PGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSK------ANNVVWT 371
P P Y P K Y PK S P K P Y T K V+T
Sbjct: 89 PTPPTYTPSPKPKSPVYPPPPKASTPPTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYT 148
Query: 372 KSPEHIMGKYLTELTSNTTPAPN---EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGP 542
SP+ + K T + PN PP S KP K + Y K + P
Sbjct: 149 PSPKPPVTKPPTPKPTPPVYTPNPKPPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPK-P 207
Query: 543 GPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTS-HLPGSPAFTMG 719
P Y +P T P T P + P YK S P P +T
Sbjct: 208 SPPTY-TPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPPTYKPAPKPSPPAPTPPTYTPP 266
Query: 720 IIHSP 734
+ H+P
Sbjct: 267 VSHTP 271
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest subunit
Length = 2452
Score = 39.3 bits (90), Expect = 0.014
Identities = 57/233 (24%), Positives = 87/233 (37%), Gaps = 15/233 (6%)
Frame = +3
Query: 81 NPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPAA--YGPDTKLTHH 254
N P+ L K ++ + +V +P + SP P + P ++ H+
Sbjct: 2186 NQQPVDATNLLFSPKNNNIMNYNVFSPKPNINNNVIQSPNIYSPNPMLDIFSPKPQINHN 2245
Query: 255 GYDAVPKYS----IGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKYLTELTSN 422
Y P YS N Y +P N+ + S ++M + +
Sbjct: 2246 IYS--PSYSPTSPTYNANNAYYSPTSP-------KNQNDQMNVNSQYNVMSPVYSVTSPK 2296
Query: 423 TTPAPNEYKLPPPDI--TSDK--PSGPKYSVGQYLHYDKS-KEGPGPADYKVGSPDLFLT 587
+P +Y P TS K P+ PKYS + S K P Y SP
Sbjct: 2297 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNI 2356
Query: 588 ASPKYT---MGSGAQMPDSRLLT-PSPAHYKHEMVTSHLPGSPAFTMGIIHSP 734
ASP Y+ + S P S + SP + K +V +H P SPA+ I+ SP
Sbjct: 2357 ASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQPMSPAY---ILQSP 2406
>sp|Q38913|EXTN1_ARATH Extensin-1 precursor (AtExt1) (AtExt4)
Length = 373
Score = 39.3 bits (90), Expect = 0.014
Identities = 57/255 (22%), Positives = 79/255 (30%), Gaps = 13/255 (5%)
Frame = +3
Query: 42 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 221
Y P P+ ++ +P P+Y +P P Y P + SP P
Sbjct: 71 YKSPPPPV--KYYSPPPVYKSPP---------------PPVYK---SPPPPVKHYSPPPV 110
Query: 222 AYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKY 401
P + H Y P Y P +K +P P KSP + Y
Sbjct: 111 YKSPPPPVKH--YSPPPVYKSPP---PPVKHYSPPPV------------YKSPPPPVKHY 153
Query: 402 LTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVG----------QYLHYDKSKEGPGPA 551
+ P P +Y PPP S P YS +Y + P P
Sbjct: 154 SPPPVYKSPPPPVKYYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPP 213
Query: 552 DYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMG---I 722
P ++ + P S + S P P HY V H P P +
Sbjct: 214 VKHYSPPPVYKSPPPPVKYYSPPPVYKS---PPPPVHYSPPPVVYHSPPPPVHYSPPPVV 270
Query: 723 IHSPYKGEHFREPPI 767
HSP H+ PP+
Sbjct: 271 YHSPPPPVHYSPPPV 285
Score = 33.1 bits (74), Expect = 0.98
Identities = 54/245 (22%), Positives = 80/245 (32%), Gaps = 4/245 (1%)
Frame = +3
Query: 42 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 221
Y P P+ ++ +P P+Y +P K + V+ P P + SP P
Sbjct: 159 YKSPPPPV--KYYSPPPVYKSPP-PPVKHYSPPPVYKSPP---------PPVKYYSPPPV 206
Query: 222 AYGPDTKLTHHGYDAV---PKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIM 392
P + H+ V P + P + + P P Y VV+ P +
Sbjct: 207 YKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVHYSPPP---VVYHSPPPPV- 262
Query: 393 GKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSP 572
+ +P P Y PPP + P +S +HY P P Y P
Sbjct: 263 ---------HYSPPPVVYHSPPPPVHYSPPPVVYHSPPPPVHY-----SPPPVVYHSPPP 308
Query: 573 DLFLTASP-KYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKGEH 749
+ + P Y + P P HY V H P P H PY
Sbjct: 309 PVHYSPPPVVYHSPPPPKKHYEYKSPPPPVHYSPPTV-YHSPPPPVHHYSPPHQPYL--- 364
Query: 750 FREPP 764
++ PP
Sbjct: 365 YKSPP 369
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1)
Length = 1752
Score = 36.2 bits (82), Expect = 0.12
Identities = 44/192 (22%), Positives = 66/192 (34%), Gaps = 4/192 (2%)
Frame = +3
Query: 150 VKAPAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGP 329
V++P Y T P + SPG P + GY P Y P +P
Sbjct: 1534 VQSPGY-----TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM------PSSPSYSPTS 1582
Query: 330 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 500
Y + + + S Y S + +P+ P P S P+ P YS
Sbjct: 1583 PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 501 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 677
+ S P Y SP + SP Y+ S + P S +P+ Y
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PT 1700
Query: 678 VTSHLPGSPAFT 713
S+ P SP+++
Sbjct: 1701 SPSYSPTSPSYS 1712
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II largest subunit
Length = 1852
Score = 35.8 bits (81), Expect = 0.15
Identities = 46/189 (24%), Positives = 71/189 (37%), Gaps = 3/189 (1%)
Frame = +3
Query: 156 APAYSFGLKTF-PHNQERSPGPAAYGPDTKLTHHGYDAVPKYS-IGQILNPYIKEVTPGP 329
+P+YS ++ P + SP Y P T T+ P YS +P +P
Sbjct: 1651 SPSYSPSSPSYSPSSPSYSPSSPRYSP-TSPTYS--PTSPTYSPTSPTYSPTSPTYSPTS 1707
Query: 330 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNT-TPAPNEYKLPPPDITSDKPSGPKYSVG 506
Y++ + SP++ TS + +P +Y P + PS P Y+
Sbjct: 1708 PSYESGGGYS---PSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYS---PSSPTYTPS 1761
Query: 507 QYLHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTS 686
+ S G Y SP + SP YT S P S TPSP+ +
Sbjct: 1762 SPTYNPTSPRGFSSPQYSPTSPT-YSPTSPSYTPSSPQYSPTSPTYTPSPSE-QPGTSAQ 1819
Query: 687 HLPGSPAFT 713
+ P SP ++
Sbjct: 1820 YSPTSPTYS 1828
Score = 34.3 bits (77), Expect = 0.44
Identities = 45/168 (26%), Positives = 63/168 (37%), Gaps = 2/168 (1%)
Frame = +3
Query: 156 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 332
+P+Y G P + + SP Y P T Y P+YS P + +P
Sbjct: 1707 SPSYESGGGYSPSSPKYSPSSPTYSP----TSPSYSPTSPQYS------PTSPQYSPSSP 1756
Query: 333 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 512
Y S T +P G + + S T+P Y P T PS P+YS
Sbjct: 1757 TYTPSSP-----TYNPTSPRG-FSSPQYSPTSPT---YSPTSPSYT---PSSPQYSPTSP 1804
Query: 513 LHYDKSKEGPG-PADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPS 653
+ E PG A Y SP + +SP Y+ S + P S P+
Sbjct: 1805 TYTPSPSEQPGTSAQYSPTSP-TYSPSSPTYSPASPSYSPSSPTYDPN 1851
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,901,139
Number of Sequences: 369166
Number of extensions: 2593576
Number of successful extensions: 6160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6041
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)