Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A05
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04052|RPB1_DROME DNA-directed RNA polymerase II largest... 43 0.001
sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell w... 42 0.002
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest... 41 0.004
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest... 41 0.004
sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest... 41 0.004
sp|P24152|EXTN_SORBI Extensin precursor (Proline-rich glyco... 40 0.010
sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest... 39 0.013
sp|Q38913|EXTN1_ARATH Extensin-1 precursor (AtExt1) (AtExt4) 39 0.013
sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II largest... 36 0.11
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II largest... 36 0.11
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II largest subunit
Length = 1887
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 14/200 (7%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAVPKYS--------IGQILNPYIK 279
+P YS T P SP P T Y A P+YS G +P
Sbjct: 1703 SPCYS---PTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSP 1759
Query: 280 EVTPGPSDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGP 459
+P YD S + SP++ +PA +Y P+ P
Sbjct: 1760 TYSPPSPSYDGSPGSPQYTPGSPQY-------------SPASPKYS----------PTSP 1796
Query: 460 KYSVGQYLHYDKSKEGPGPADYKVGSP------DLFLTASPKYTMGSGAQMPDSRLLTPS 621
YS H ++ P + Y SP ++ +S KY+ S P +R +P+
Sbjct: 1797 LYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPT 1856
Query: 622 PAHYKHEMVTSHLPGSPAFT 681
Y + + P SPA++
Sbjct: 1857 SPMYSPTAPSHYSPTSPAYS 1876
>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
glycoprotein 1) (HRGP1)
Length = 743
Score = 42.0 bits (97), Expect = 0.002
Identities = 60/247 (24%), Positives = 84/247 (34%), Gaps = 6/247 (2%)
Frame = +1
Query: 10 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 189
Y P P +++P P Y +P+ V+ K+P P SP P
Sbjct: 418 YKSPPPPYV--YSSPPPPYYSPS---------PKVYYKSPP--------PPYVYSSPPPP 458
Query: 190 AYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKY 369
Y P K+ + P Y PY +P P Y S V++ P
Sbjct: 459 YYSPSPKVYYKS--PPPPYVYSSPPPPYY---SPSPKVYYKSPPPPYVYSSPPPPYY--- 510
Query: 370 LTELTSNTTPAPNEY-KLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSPDL 546
+P+P Y K PPP P P YS +HY K P P Y P
Sbjct: 511 --------SPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVHY---KSPPPPYVYS-SPPPP 558
Query: 547 FLTASPKYTMGSGA-----QMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKG 711
+ + SPK S P +PSP Y ++ SP +SP
Sbjct: 559 YYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYVYSSPP---PPYYSPSPK 615
Query: 712 EHFREPP 732
+++ PP
Sbjct: 616 VYYKSPP 622
Score = 40.4 bits (93), Expect = 0.006
Identities = 49/206 (23%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
Frame = +1
Query: 175 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 312
SP P Y P K+ + Y PK PY+ P P+ +
Sbjct: 304 SPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPTYSPS 363
Query: 313 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 489
K + + P ++ Y + +P+P EYK PPP P P YS ++Y
Sbjct: 364 PKVDYK--SPPPPYV---YSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYSPSPKVYY 418
Query: 490 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGA-----QMPDSRLLTPSPAHYKHEMVTS 654
K P P Y P + + SPK S P +PSP Y
Sbjct: 419 ---KSPPPPYVYS-SPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPP 474
Query: 655 HLPGSPAFTMGIIHSPYKGEHFREPP 732
++ SP +SP +++ PP
Sbjct: 475 YVYSSPP---PPYYSPSPKVYYKSPP 497
Score = 37.7 bits (86), Expect = 0.037
Identities = 45/192 (23%), Positives = 63/192 (32%), Gaps = 15/192 (7%)
Frame = +1
Query: 175 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 312
SP P Y P K+ + Y PK PY+ P P +
Sbjct: 79 SPPPPTYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYNSPPPPYYSPS 138
Query: 313 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 489
K + + P ++ Y + +P+P EYK PPP P P YS + Y
Sbjct: 139 PKVDYK--SPPPPYV---YSSPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVDY 193
Query: 490 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGS 669
K P P Y P + + SPK S P +P P +Y +
Sbjct: 194 ---KSPPPPYVYS-SPPPPYYSPSPKVEYKS--PPPPYVYSSPPPPYYSPSPKVDYKSPP 247
Query: 670 PAFTMGIIHSPY 705
P + PY
Sbjct: 248 PPYVYSSPPPPY 259
Score = 37.4 bits (85), Expect = 0.049
Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Frame = +1
Query: 394 TPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSPDLFLTASPKY 570
TPAP EYK PPP P P YS + Y K P P Y P + + SPK
Sbjct: 61 TPAPEVEYKSPPPPYVYSSPPPPTYSPSPKVDY---KSPPPPYVYS-SPPPPYYSPSPKV 116
Query: 571 TMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPY-----KGEHFREPP 732
S P +P P +Y + P + PY K E+ PP
Sbjct: 117 DYKS--PPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPP 173
Score = 36.6 bits (83), Expect = 0.083
Identities = 52/209 (24%), Positives = 72/209 (34%), Gaps = 24/209 (11%)
Frame = +1
Query: 10 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPA------------YSFGLKT 153
Y P P +++P P Y +P+ VH K+P YS K
Sbjct: 543 YKSPPPPYV--YSSPPPPYYSPS---------PKVHYKSPPPPYVYNSPPPPYYSPSPKV 591
Query: 154 F-----PHNQERSPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTS- 315
+ P SP P Y P K+ + P Y PY +P P Y S
Sbjct: 592 YYKSPPPPYVYSSPPPPYYSPSPKVYYKS--PPPPYVYSSPPPPYY---SPSPKVYYKSP 646
Query: 316 -----KANNVVWTKSPEHIMGKYLTELTSNTTPAPNE-YKLPPPDITSDKPSGPKYSVGQ 477
+ V+ KSP H +P+P YK PPP + P P YS
Sbjct: 647 PPPYYSPSPKVYYKSPPHPHVCVCPPPPPCYSPSPKVVYKSPPPPYVYNSPPPPYYSPSP 706
Query: 478 YLHYDKSKEGPGPADYKVGSPDLFLTASP 564
++Y + P P Y SP + + P
Sbjct: 707 KVYY----KSPPPPSYYSPSPKVEYKSPP 731
Score = 35.8 bits (81), Expect = 0.14
Identities = 45/192 (23%), Positives = 62/192 (32%), Gaps = 15/192 (7%)
Frame = +1
Query: 175 SPGPAAYGPDTKLTHHG--------------YDAVPKYSIGQILNPYIKEVTPGPSDYDT 312
SP P Y P K+ + Y PK PY+ P P
Sbjct: 154 SPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPY---Y 210
Query: 313 SKANNVVWTKSPEHIMGKYLTELTSNTTPAPN-EYKLPPPDITSDKPSGPKYSVGQYLHY 489
S + V + P + Y + +P+P +YK PPP P P YS + Y
Sbjct: 211 SPSPKVEYKSPPPPYV--YSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDY 268
Query: 490 DKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGS 669
K P P Y P + + SPK S P +P P +Y +
Sbjct: 269 ---KSPPPPYVYS-SPPPPYYSPSPKVDYKS--PPPPYVYSSPPPPYYSPSPKVDYKSPP 322
Query: 670 PAFTMGIIHSPY 705
P + PY
Sbjct: 323 PPYVYSSPPPPY 334
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 40.8 bits (94), Expect = 0.004
Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 297
+P+YS T P SP + P T Y P YS +P +P
Sbjct: 1689 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745
Query: 298 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 468
+Y + N + S Y + T +PN P P S P+ P YS
Sbjct: 1746 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805
Query: 469 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 645
+ +S P Y SP + SPKYT S + P S TP+ Y
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPASPKYS-PT 1863
Query: 646 VTSHLPGSPAFT 681
+ P SP ++
Sbjct: 1864 SPKYSPTSPKYS 1875
Score = 37.7 bits (86), Expect = 0.037
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 300
+P+YS T P+ SP + P T Y P YS P TP
Sbjct: 1766 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 1816
Query: 301 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 480
Y S + + S KY TP Y P+ T P+ PKYS
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PASPKYSP--- 1862
Query: 481 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 660
K P Y SP + +PKY+ S P S + TP+ Y T +
Sbjct: 1863 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 1917
Query: 661 PGSPAFT 681
P SP ++
Sbjct: 1918 PTSPKYS 1924
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 40.8 bits (94), Expect = 0.004
Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 297
+P+YS T P SP + P T Y P YS +P +P
Sbjct: 1689 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1745
Query: 298 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 468
+Y + N + S Y + T +PN P P S P+ P YS
Sbjct: 1746 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 1805
Query: 469 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 645
+ +S P Y SP + SPKYT S + P S TP+ Y
Sbjct: 1806 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPTSPKYS-PT 1863
Query: 646 VTSHLPGSPAFT 681
+ P SP ++
Sbjct: 1864 SPKYSPTSPKYS 1875
Score = 37.7 bits (86), Expect = 0.037
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 300
+P+YS T P+ SP + P T Y P YS P TP
Sbjct: 1766 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 1816
Query: 301 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 480
Y S + + S KY TP Y P+ T P+ PKYS
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PTSPKYSP--- 1862
Query: 481 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 660
K P Y SP + +PKY+ S P S + TP+ Y T +
Sbjct: 1863 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 1917
Query: 661 PGSPAFT 681
P SP ++
Sbjct: 1918 PTSPKYS 1924
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 467
Score = 40.8 bits (94), Expect = 0.004
Identities = 48/192 (25%), Positives = 67/192 (34%), Gaps = 6/192 (3%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYS-IGQILNPYIKEVTPGP 297
+P+YS T P SP + P T Y P YS +P +P
Sbjct: 186 SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 242
Query: 298 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 468
+Y + N + S Y + T +PN P P S P+ P YS
Sbjct: 243 PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS 302
Query: 469 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 645
+ +S P Y SP + SPKYT S + P S TP+ Y
Sbjct: 303 PSSPRYTPQSPTYTPSSPSYSPSSPS-YSPTSPKYTPTSPSYSPSSPEYTPTSPKYS-PT 360
Query: 646 VTSHLPGSPAFT 681
+ P SP ++
Sbjct: 361 SPKYSPTSPKYS 372
Score = 37.7 bits (86), Expect = 0.037
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 1/187 (0%)
Frame = +1
Query: 124 APAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAV-PKYSIGQILNPYIKEVTPGPS 300
+P+YS T P+ SP + P T Y P YS P TP
Sbjct: 263 SPSYS---PTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS------PSSPRYTPQSP 313
Query: 301 DYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQY 480
Y S + + S KY TP Y P+ T P+ PKYS
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYT---PTSPKYSP--- 359
Query: 481 LHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHL 660
K P Y SP + +PKY+ S P S + TP+ Y T +
Sbjct: 360 ---TSPKYSPTSPKYSPTSPT-YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT-YS 414
Query: 661 PGSPAFT 681
P SP ++
Sbjct: 415 PTSPKYS 421
>sp|P24152|EXTN_SORBI Extensin precursor (Proline-rich glycoprotein)
Length = 283
Score = 39.7 bits (91), Expect = 0.010
Identities = 62/245 (25%), Positives = 75/245 (30%), Gaps = 11/245 (4%)
Frame = +1
Query: 1 GYPYTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAP-AYSFGLKTFPHNQERS 177
GYP P+ P P G G K H P Y+ K P
Sbjct: 33 GYPTPTPKPPAKGPKPEKPPTKGH----GHKPEKPPKEHKPTPPTYTPSPKPTPPPATPK 88
Query: 178 PGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSK------ANNVVWT 339
P P Y P K Y PK S P K P Y T K V+T
Sbjct: 89 PTPPTYTPSPKPKSPVYPPPPKASTPPTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYT 148
Query: 340 KSPEHIMGKYLTELTSNTTPAPN---EYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGP 510
SP+ + K T + PN PP S KP K + Y K + P
Sbjct: 149 PSPKPPVTKPPTPKPTPPVYTPNPKPPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPK-P 207
Query: 511 GPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTS-HLPGSPAFTMG 687
P Y +P T P T P + P YK S P P +T
Sbjct: 208 SPPTY-TPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPPTYKPAPKPSPPAPTPPTYTPP 266
Query: 688 IIHSP 702
+ H+P
Sbjct: 267 VSHTP 271
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest subunit
Length = 2452
Score = 39.3 bits (90), Expect = 0.013
Identities = 57/233 (24%), Positives = 87/233 (37%), Gaps = 15/233 (6%)
Frame = +1
Query: 49 NPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPAA--YGPDTKLTHH 222
N P+ L K ++ + +V +P + SP P + P ++ H+
Sbjct: 2186 NQQPVDATNLLFSPKNNNIMNYNVFSPKPNINNNVIQSPNIYSPNPMLDIFSPKPQINHN 2245
Query: 223 GYDAVPKYS----IGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKYLTELTSN 390
Y P YS N Y +P N+ + S ++M + +
Sbjct: 2246 IYS--PSYSPTSPTYNANNAYYSPTSP-------KNQNDQMNVNSQYNVMSPVYSVTSPK 2296
Query: 391 TTPAPNEYKLPPPDI--TSDK--PSGPKYSVGQYLHYDKS-KEGPGPADYKVGSPDLFLT 555
+P +Y P TS K P+ PKYS + S K P Y SP
Sbjct: 2297 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNI 2356
Query: 556 ASPKYT---MGSGAQMPDSRLLT-PSPAHYKHEMVTSHLPGSPAFTMGIIHSP 702
ASP Y+ + S P S + SP + K +V +H P SPA+ I+ SP
Sbjct: 2357 ASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQPMSPAY---ILQSP 2406
>sp|Q38913|EXTN1_ARATH Extensin-1 precursor (AtExt1) (AtExt4)
Length = 373
Score = 39.3 bits (90), Expect = 0.013
Identities = 57/255 (22%), Positives = 79/255 (30%), Gaps = 13/255 (5%)
Frame = +1
Query: 10 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 189
Y P P+ ++ +P P+Y +P P Y P + SP P
Sbjct: 71 YKSPPPPV--KYYSPPPVYKSPP---------------PPVYK---SPPPPVKHYSPPPV 110
Query: 190 AYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIMGKY 369
P + H Y P Y P +K +P P KSP + Y
Sbjct: 111 YKSPPPPVKH--YSPPPVYKSPP---PPVKHYSPPPV------------YKSPPPPVKHY 153
Query: 370 LTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVG----------QYLHYDKSKEGPGPA 519
+ P P +Y PPP S P YS +Y + P P
Sbjct: 154 SPPPVYKSPPPPVKYYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPP 213
Query: 520 DYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMG---I 690
P ++ + P S + S P P HY V H P P +
Sbjct: 214 VKHYSPPPVYKSPPPPVKYYSPPPVYKS---PPPPVHYSPPPVVYHSPPPPVHYSPPPVV 270
Query: 691 IHSPYKGEHFREPPI 735
HSP H+ PP+
Sbjct: 271 YHSPPPPVHYSPPPV 285
Score = 33.1 bits (74), Expect = 0.92
Identities = 54/245 (22%), Positives = 80/245 (32%), Gaps = 4/245 (1%)
Frame = +1
Query: 10 YTKPRMPIAAQFANPGPIYGAPTLVGEKGHDFRSVHVKAPAYSFGLKTFPHNQERSPGPA 189
Y P P+ ++ +P P+Y +P K + V+ P P + SP P
Sbjct: 159 YKSPPPPV--KYYSPPPVYKSPP-PPVKHYSPPPVYKSPP---------PPVKYYSPPPV 206
Query: 190 AYGPDTKLTHHGYDAV---PKYSIGQILNPYIKEVTPGPSDYDTSKANNVVWTKSPEHIM 360
P + H+ V P + P + + P P Y VV+ P +
Sbjct: 207 YKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVHYSPPP---VVYHSPPPPV- 262
Query: 361 GKYLTELTSNTTPAPNEYKLPPPDITSDKPSGPKYSVGQYLHYDKSKEGPGPADYKVGSP 540
+ +P P Y PPP + P +S +HY P P Y P
Sbjct: 263 ---------HYSPPPVVYHSPPPPVHYSPPPVVYHSPPPPVHY-----SPPPVVYHSPPP 308
Query: 541 DLFLTASP-KYTMGSGAQMPDSRLLTPSPAHYKHEMVTSHLPGSPAFTMGIIHSPYKGEH 717
+ + P Y + P P HY V H P P H PY
Sbjct: 309 PVHYSPPPVVYHSPPPPKKHYEYKSPPPPVHYSPPTV-YHSPPPPVHHYSPPHQPYL--- 364
Query: 718 FREPP 732
++ PP
Sbjct: 365 YKSPP 369
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1)
Length = 1752
Score = 36.2 bits (82), Expect = 0.11
Identities = 44/192 (22%), Positives = 66/192 (34%), Gaps = 4/192 (2%)
Frame = +1
Query: 118 VKAPAYSFGLKTFPHNQERSPGPAAYGPDTKLTHHGYDAVPKYSIGQILNPYIKEVTPGP 297
V++P Y T P + SPG P + GY P Y P +P
Sbjct: 1534 VQSPGY-----TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM------PSSPSYSPTS 1582
Query: 298 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNTTPAPNEYKLPP---PDITSDKPSGPKYS 468
Y + + + S Y S + +P+ P P S P+ P YS
Sbjct: 1583 PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 469 VGQYLHYDKSKE-GPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEM 645
+ S P Y SP + SP Y+ S + P S +P+ Y
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PT 1700
Query: 646 VTSHLPGSPAFT 681
S+ P SP+++
Sbjct: 1701 SPSYSPTSPSYS 1712
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II largest subunit
Length = 1852
Score = 36.2 bits (82), Expect = 0.11
Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 4/212 (1%)
Frame = +1
Query: 124 APAYSFGLKTF-PHNQERSPGPAAYGPDTKLTHHGYDAVPKYS-IGQILNPYIKEVTPGP 297
+P+YS ++ P + SP Y P T T+ P YS +P +P
Sbjct: 1651 SPSYSPSSPSYSPSSPSYSPSSPRYSP-TSPTYS--PTSPTYSPTSPTYSPTSPTYSPTS 1707
Query: 298 SDYDTSKANNVVWTKSPEHIMGKYLTELTSNT-TPAPNEYKLPPPDITSDKPSGPKYSVG 474
Y++ + SP++ TS + +P +Y P + PS P Y+
Sbjct: 1708 PSYESGGGYS---PSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYS---PSSPTYTPS 1761
Query: 475 QYLHYDKSKEGPGPADYKVGSPDLFLTASPKYTMGSGAQMPDSRLLTPSPAHYKHEMVTS 654
+ S G Y SP + SP YT S P S TPSP+ +
Sbjct: 1762 SPTYNPTSPRGFSSPQYSPTSPT-YSPTSPSYTPSSPQYSPTSPTYTPSPSE-QPGTSAQ 1819
Query: 655 HLPGSPAFT-MGIIHSPYKGEHFREPPIED*N 747
+ P SP ++ +SP + P D N
Sbjct: 1820 YSPTSPTYSPSSPTYSPASPSYSPSSPTYDPN 1851
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,854,920
Number of Sequences: 369166
Number of extensions: 2501158
Number of successful extensions: 5810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5691
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)