Planaria EST Database

DrC_00285

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00285
         (1659 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24346|AN3_XENLA  Putative ATP-dependent RNA helicase An3      192   2e-48
sp|O00571|DDX3X_HUMAN  DEAD-box protein 3, X-chromosomal (He...   191   5e-48
sp|P16381|PL10_MOUSE  Putative ATP-dependent RNA helicase PL10    190   1e-47
sp|Q62167|DDX3X_MOUSE  DEAD-box protein 3, X-chromosomal (DE...   189   2e-47
sp|Q5RF43|DDX3Y_PONPY  DEAD-box protein 3, Y-chromosomal          187   1e-46
sp|O15523|DDX3Y_HUMAN  DEAD-box protein 3, Y-chromosomal          186   1e-46
sp|Q62095|DDX3Y_MOUSE  DEAD-box protein 3, Y-chromosomal (DE...   184   7e-46
sp|Q6GVM6|DDX3Y_PANTR  DEAD-box protein 3, Y-chromosomal          184   9e-46
sp|O13370|DED1_SCHPO  ATP-dependent RNA helicase ded1             165   3e-40
sp|P06634|DED1_YEAST  Probable ATP-dependent RNA helicase DED1    161   5e-39

>sp|P24346|AN3_XENLA Putative ATP-dependent RNA helicase An3
          Length = 697

 Score =  192 bits (489), Expect = 2e-48
 Identities = 106/200 (53%), Positives = 125/200 (62%), Gaps = 3/200 (1%)
 Frame = +3

Query: 3    YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
            +V+E +KR                 VFVETK+GADALE FL+ EG+   SIHGDRSQ DR
Sbjct: 462  WVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDR 521

Query: 183  ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
            E AL  FR G +PILVATAVAARGLDI NVK VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 522  EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 581

Query: 363  AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAHR---XXXXXXXXXXXXXXXXR 533
            A SF+ +KN N+ K+L+D+L+EA Q VP WL     E H                     
Sbjct: 582  ATSFFNEKNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKSSSRGRSKSRFSGGFGAKD 641

Query: 534  YMSSASGAPSYGTSRDYRQS 593
            Y  S+    S+G+SR  R S
Sbjct: 642  YRQSSGAGSSFGSSRGGRSS 661

>sp|O00571|DDX3X_HUMAN DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2)
            (DEAD-box, X isoform)
          Length = 662

 Score =  191 bits (485), Expect = 5e-48
 Identities = 112/222 (50%), Positives = 133/222 (59%)
 Frame = +3

Query: 3    YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
            +V+E++KR                 VFVETK+GAD+LE FL+ EG+   SIHGDRSQ DR
Sbjct: 421  WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 480

Query: 183  ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
            E AL  FR G +PILVATAVAARGLDI NVK VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 481  EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 540

Query: 363  AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAHRXXXXXXXXXXXXXXXXRYMS 542
            A SF+ ++N N+ K+L+D+L+EA Q VP WL     E H                 R  S
Sbjct: 541  ATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHH------------YKGSSRGRS 588

Query: 543  SASGAPSYGTSRDYRQSQSHVDTRTQRQISYDESSFSSMRNS 668
             +S       +RDYRQS                SSFSS R S
Sbjct: 589  KSSRFSGGFGARDYRQSS-----------GASSSSFSSSRAS 619

>sp|P16381|PL10_MOUSE Putative ATP-dependent RNA helicase PL10
          Length = 660

 Score =  190 bits (482), Expect = 1e-47
 Identities = 112/224 (50%), Positives = 135/224 (60%)
 Frame = +3

Query: 3    YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
            +V+E +KR                 VFVETK+GAD+LE FL+ EG+   SIHGDRSQ DR
Sbjct: 420  WVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 479

Query: 183  ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
            E AL  FR G +PILVATAVAARGLDI NVK VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 480  EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 539

Query: 363  AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAHRXXXXXXXXXXXXXXXXRYMS 542
            A SF+ ++N N+ K+L+D+L+EA Q VP WL     E H                 R  S
Sbjct: 540  ATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHH------------YKGGSRGRS 587

Query: 543  SASGAPSYGTSRDYRQSQSHVDTRTQRQISYDESSFSSMRNSRN 674
             +  +  +G +RDYRQS                SSFSS R S +
Sbjct: 588  KSRFSGGFG-ARDYRQSS-----------GASSSSFSSGRASNS 619

>sp|Q62167|DDX3X_MOUSE DEAD-box protein 3, X-chromosomal (DEAD-box RNA helicase DEAD3)
            (mDEAD3) (Embryonic RNA helicase) (D1Pas1-related
            sequence 2)
          Length = 662

 Score =  189 bits (481), Expect = 2e-47
 Identities = 112/222 (50%), Positives = 132/222 (59%)
 Frame = +3

Query: 3    YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
            +V+E +KR                 VFVETK+GAD+LE FL+ EG+   SIHGDRSQ DR
Sbjct: 421  WVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 480

Query: 183  ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
            E AL  FR G +PILVATAVAARGLDI NVK VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 481  EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 540

Query: 363  AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAHRXXXXXXXXXXXXXXXXRYMS 542
            A SF+ ++N N+ K+L+D+L+EA Q VP WL     E H                 R  S
Sbjct: 541  ATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHH------------YKGSSRGRS 588

Query: 543  SASGAPSYGTSRDYRQSQSHVDTRTQRQISYDESSFSSMRNS 668
             +S       +RDYRQS                SSFSS R S
Sbjct: 589  KSSRFSGGFGARDYRQSS-----------GASSSSFSSSRAS 619

>sp|Q5RF43|DDX3Y_PONPY DEAD-box protein 3, Y-chromosomal
          Length = 658

 Score =  187 bits (474), Expect = 1e-46
 Identities = 105/212 (49%), Positives = 125/212 (58%), Gaps = 18/212 (8%)
 Frame = +3

Query: 3    YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
            +V++ +KR                 VFVETK+GAD+LE FL+ EG+   SIHGDRSQ DR
Sbjct: 419  WVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 478

Query: 183  ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
            E AL  FR G +PILVATAVAARGLDI NV+ VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 479  EEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGL 538

Query: 363  AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAH------------------RXX 488
            A SF+ +KN N+ K+L+D+L+EA Q VP WL     E H                  R  
Sbjct: 539  ATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKRFSGGFGARDY 598

Query: 489  XXXXXXXXXXXXXXRYMSSASGAPSYGTSRDY 584
                          R  SS SG   YG SR +
Sbjct: 599  RQSSGSSSSGFGASRGSSSRSGGSGYGNSRGF 630

>sp|O15523|DDX3Y_HUMAN DEAD-box protein 3, Y-chromosomal
          Length = 660

 Score =  186 bits (473), Expect = 1e-46
 Identities = 95/159 (59%), Positives = 114/159 (71%)
 Frame = +3

Query: 3   YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
           +V++ +KR                 VFVETK+GAD+LE FL+ EG+   SIHGDRSQ DR
Sbjct: 419 WVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 478

Query: 183 ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
           E AL  FR G +PILVATAVAARGLDI NV+ VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 479 EEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGL 538

Query: 363 AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAH 479
           A SF+ +KN N+ K+L+D+L+EA Q VP WL     E H
Sbjct: 539 ATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYEHH 577

>sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DEAD-box RNA helicase DEAD2)
            (mDEAD2) (D1Pas1-related sequence 1)
          Length = 658

 Score =  184 bits (467), Expect = 7e-46
 Identities = 107/221 (48%), Positives = 129/221 (58%)
 Frame = +3

Query: 3    YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
            +V+E +KR                 VFVETK+GAD+LE FL  E +   SIHGDRSQ DR
Sbjct: 420  WVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDR 479

Query: 183  ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
            E AL  FR G  PILVATAVAARGLDI NVK VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 480  EEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 539

Query: 363  AISFYTDKNNNVAKELVDILLEANQIVPDWLREKIGEAHRXXXXXXXXXXXXXXXXRYMS 542
            A SF+ ++N N+ K+L+D+L+EA Q VP WL     E H                 R  S
Sbjct: 540  ATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHH------------YKGSSRGRS 587

Query: 543  SASGAPSYGTSRDYRQSQSHVDTRTQRQISYDESSFSSMRN 665
             +  +  +G +RDYRQS    +       +    S  S  N
Sbjct: 588  KSRFSGGFG-ARDYRQSSGSANAGFNSNRANSSRSSGSSHN 627

>sp|Q6GVM6|DDX3Y_PANTR DEAD-box protein 3, Y-chromosomal
          Length = 660

 Score =  184 bits (466), Expect = 9e-46
 Identities = 93/151 (61%), Positives = 112/151 (74%)
 Frame = +3

Query: 3   YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
           +V++ +KR                 VFVETK+GAD+LE FL+ EG+   SIHGDRSQ DR
Sbjct: 419 WVEDLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 478

Query: 183 ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
           E AL  FR G +PILVATAVAARGLDI NV+ VIN+DLP+DIEEYVHRIGRTGRVGNLG 
Sbjct: 479 EEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGL 538

Query: 363 AISFYTDKNNNVAKELVDILLEANQIVPDWL 455
           A SF+ +KN N+ K+L+D+L+EA Q VP WL
Sbjct: 539 ATSFFNEKNINITKDLLDLLVEAKQEVPSWL 569

>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1
          Length = 636

 Score =  165 bits (418), Expect = 3e-40
 Identities = 82/151 (54%), Positives = 104/151 (68%)
 Frame = +3

Query: 3   YVDENEKRXXXXXXXXXXXXXXXXXVFVETKRGADALEGFLHTEGFRVASIHGDRSQTDR 182
           +V+++EKR                 +FVETKR AD L  +L    F   SIHGDR+Q +R
Sbjct: 410 HVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRER 469

Query: 183 ELALQCFREGSTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGE 362
           E AL+ FR G T I+VATAVA+RGLDIPNV  VINYDLPTDI++YVHRIGRTGR GN G+
Sbjct: 470 ERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQ 529

Query: 363 AISFYTDKNNNVAKELVDILLEANQIVPDWL 455
           A++F+   N  +AKEL+++L EANQ  P +L
Sbjct: 530 AVAFFNRNNKGIAKELIELLQEANQECPSFL 560

>sp|P06634|DED1_YEAST Probable ATP-dependent RNA helicase DED1
          Length = 604

 Score =  161 bits (408), Expect = 5e-39
 Identities = 79/133 (59%), Positives = 101/133 (75%)
 Frame = +3

Query: 78  VFVETKRGADALEGFLHTEGFRVASIHGDRSQTDRELALQCFREGSTPILVATAVAARGL 257
           +FVETKR AD L  FL  + FR  +IHGDR+Q++RE AL  FR G+  +LVATAVAARGL
Sbjct: 404 IFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGL 463

Query: 258 DIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISFYTDKNNNVAKELVDILLEANQ 437
           DIPNV  VINYDLP+D+++YVHRIGRTGR GN G A +F+  +N+N+ K L +IL EANQ
Sbjct: 464 DIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQ 523

Query: 438 IVPDWLREKIGEA 476
            VP +L++ +  A
Sbjct: 524 EVPSFLKDAMMSA 536

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,143,545
Number of Sequences: 369166
Number of extensions: 3417321
Number of successful extensions: 10031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9944
length of database: 68,354,980
effective HSP length: 116
effective length of database: 46,925,720
effective search space used: 20459613920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00285

  1. Dr_sW_007_N18
  2. Dr_sW_009_N07
  3. Dr_sW_009_C12
  4. Dr_sW_017_P24