Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_P24
(747 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96N68|CR015_HUMAN Hypothetical protein C18orf15 35 0.16
sp|Q8NB54|CR023_HUMAN Hypothetical protein C18orf23 33 0.62
sp|Q9Z1S5|SEPT3_MOUSE Neuronal-specific septin-3 33 0.81
sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 32 1.4
sp|Q02722|Q300_MOUSE Protein Q300 31 4.0
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 30 5.3
sp|Q89AL1|RLUB_BUCBP Ribosomal large subunit pseudouridine ... 30 6.9
sp|Q9V498|CSTN1_DROME Calsyntenin-1 precursor 30 9.0
>sp|Q96N68|CR015_HUMAN Hypothetical protein C18orf15
Length = 181
Score = 35.4 bits (80), Expect = 0.16
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 86 ICLCVRLTSNCVYVCVCARVCLYCTALLLSCCHARPLVRCCQLTSYHFFICAIICS 253
+C+CV + + CVYVC+C VC+ A C + Y CA ICS
Sbjct: 133 MCVCVHVCA-CVYVCMCVLVCMCACA-------------CMRAHRYFLMDCAGICS 174
>sp|Q8NB54|CR023_HUMAN Hypothetical protein C18orf23
Length = 160
Score = 33.5 bits (75), Expect = 0.62
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +2
Query: 89 CLCVRLT---SNCVYVCVCARVCLYCTALLLSCCHA----RPLVRC 205
CLC+ + S C+ CVC VCLY + C A RP + C
Sbjct: 42 CLCMTVAYTGSRCLGACVCVCVCLYVCVHVCECARAPRRVRPALLC 87
>sp|Q9Z1S5|SEPT3_MOUSE Neuronal-specific septin-3
Length = 465
Score = 33.1 bits (74), Expect = 0.81
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 92 LCVRLTSNCVYVCVCARVCLY-CTALLLSCCHARPLVRCCQLTSYHFFICAIICSVDKYA 268
LC L+S CV VCVC VC+Y C ++ S C V C + S +C +C
Sbjct: 365 LCSILSSVCVCVCVC--VCMYVCMCVMESAC-----VYVCVMES--ACVCVCMCVYVCVY 415
Query: 269 SLLLLFIDPL*SVVIGTPIVCTTH 340
S + F PL V+ + T H
Sbjct: 416 SGVRYFHCPLWKVLCKSAFSMTLH 439
>sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4
Length = 95
Score = 32.3 bits (72), Expect = 1.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 80 FLICLCVRLTSNCVYVCVCARVCLYCTALLLSC 178
F +C+CV + CVYV VC ++ TAL L C
Sbjct: 15 FSVCMCVHVL--CVYVHVCTYAHIWTTALHLRC 45
>sp|Q02722|Q300_MOUSE Protein Q300
Length = 77
Score = 30.8 bits (68), Expect = 4.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 110 SNCVYVCVCARVCL-YCTALLLSCCHARPLVRCCQLTSYH--FFICAII 247
+N YVCVC VC+ C L C + + C + H F+C +I
Sbjct: 22 TNLFYVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHCGVFVCVLI 70
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 30.4 bits (67), Expect = 5.3
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Frame = +2
Query: 86 ICLCVRLTSN-----------CVYVCVCARVCLYCTALLLSCCHARPLVRCCQLTSYHFF 232
+CLC+ + SN C+++ +CL C L C L+ C + H F
Sbjct: 23 VCLCLLVLSNSLLHLFLPCFVCLFLPCFVCLCLPCFVCLCLPCFVYLLLPCVSNSLLHLF 82
Query: 233 ICAIICSVDKYASLLLL 283
+ + C + + L L
Sbjct: 83 LPSFACLLLSFVCLFCL 99
>sp|Q89AL1|RLUB_BUCBP Ribosomal large subunit pseudouridine synthase B (rRNA-uridine
isomerase B) (rRNA pseudouridylate synthase B)
Length = 247
Score = 30.0 bits (66), Expect = 6.9
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = -2
Query: 569 RYLISIIKNYIVY*NDKLIK*AHENILNQFKNHL*FNLTSQFN*S*IPIKNSNYKSRL*T 390
RY+ S+IK++ V ND+++K +N + + I N+NYK +L
Sbjct: 18 RYIESLIKSHSVKINDEVVKVGQRISINVIQK--------------VIINNNNYKPKLNI 63
Query: 389 NKLSI*MKRVMILCNENVLCTR 324
NK +K ++ E +CTR
Sbjct: 64 NKS---LKVLLYNKPEGEICTR 82
>sp|Q9V498|CSTN1_DROME Calsyntenin-1 precursor
Length = 978
Score = 29.6 bits (65), Expect = 9.0
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = +2
Query: 38 ESSVYDYNVIKPRYFLICLCVRLTSNCVYVCVCARVCLYCTALLLSCCHARPLVRCCQLT 217
E + +++++K Y I + L +N L AR + C
Sbjct: 67 EEKICNFHILKKPYHEIPFKIELVNN------------------LGILKARRTLNCENRK 108
Query: 218 SYHFFICAIIC 250
SYHF ICAI C
Sbjct: 109 SYHFEICAIYC 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,247,951
Number of Sequences: 369166
Number of extensions: 1388170
Number of successful extensions: 2908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2846
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)