Planarian EST Database

DrC_00271

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00271 AGTTGTTTCTAATTTGGAGTTGGTTGATGAACTTAATACATTAGCTCTTCAACAAATTAA GGATGCTGAAAAAACTTTAAAAAAGGTAAAAAAGCAAGAAAAAATGGAAAATAAGAGACA TGAAGCTTCGTTAATTGAATTTGTAATGAAAACATATTACTTATTAGAGCGTATTTTTGA AAACCCCAAGGTTCAATCCAAATTAATATCAGAAAAGTGTATGGAAGGTGACGATATGAA TTTGTTGAAAGAATTGTTCAACGAGATTCATATCAGTGAAAAAGGAAATTGGAAAAAGTG TTCTGAGCAACTCCAATCTCTCTTTGATGGAGGAAGTAAACCTTTAGATTTTGGTAACAC AGAAGATCACGCATTAAAGTATGTATCAAAAGATGATTTACTTAAATGCGTGGAAAAACT TTCCACTATTGATTGGTTAGCGTCAAATACTACGAAAGATTTTTTAGAGAAAGAAGTGGA ACATGAGGAAGTTGGTGATATAGAGATTGAAGAGGTCAATATATCTGAAAACACAGTCGA AATAACAGAATCACAGCAACCGGTATCTAATAAAGAAATAGAAGTTCCAATCGAAAAACA TTCTGTACAACCTGAAAATACAAAGCTTAATTTTGTATTTTTGCACGAATCCTTAGTACA AGAAGATGGGTGTTCAAAATACACTGAAAATGGATATGATAGTGGCGCATTTAACGATGA ACACGTGCCAAGATCAAATTCTCAGATGTCTGGGAAGAGTGTTGGGAATTCAAATCCAAA TAATGCTTGGAATGTTGAATCTGAAAATGCTGTTGATGATGTTTTTAGTAGTGCCACACA GTCTGAATTTATGCACTCAGAAAATTCTAGAAATCTAAAAACGCGAGGTCAGCGTCAACC AACTAATGGTAGATTTAGGGGTAGAGGAGTTACAATAACTCCGGCTTATTCAAATAGAGA TACTCCGCCCGAAGCTATTAATTATTGGAAGTCTAATAATAGAGGCTCGTTTAATTCCAA TCCTCGATATCCAAGATCTAGTCGCGGTAGAGGTCGTGGTCGAGGAAATGGACGTCCAGA AAATAGGCAAGCGAATGATGAAATTTTAACATCAATGTAGTAACTGCTCAACTCGATTTT ATCCTAAAACAGGATGTAATAAATTGGCATAACTGTGGAATGTTTCCTTGTTTTGTTTTT GCAGCTGTGTAAAAATGCCTTTGGCAATGTTAGTAATAAATTGAGATCCCAAAGGAATGT GTATTTTATAATTAAATAAATATATTTGTAAACC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00271
         (1294 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14157|MYO3_SCHPO  Myosin type II heavy chain 2                 33   1.4  
sp|Q04322|YM52_YEAST  Hypothetical 82.1 kDa protein in SGS1-...    33   1.8  
sp|Q9UIG0|BAZ1B_HUMAN  Bromodomain adjacent to zinc finger d...    32   3.1  
sp|P32499|NUP2_YEAST  Nucleoporin NUP2 (Nuclear pore protein...    32   3.1  
sp|Q8E5P8|GLMS_STRA3  Glucosamine--fructose-6-phosphate amin...    32   4.0  
sp|Q8DZZ7|GLMS_STRA5  Glucosamine--fructose-6-phosphate amin...    32   4.0  
sp|Q54875|IGA1B_STRPN  Immunoglobulin A1 protease precursor ...    32   4.0  
sp|P30189|TOP1_DROME  DNA topoisomerase I                          32   5.2  
sp|Q9NSY1|BMP2K_HUMAN  BMP-2 inducible protein kinase (BIKe)       32   5.2  
sp|Q27913|GBP_PSESE  Growth-blocking peptide precursor (GBP)       32   5.2

>sp|O14157|MYO3_SCHPO Myosin type II heavy chain 2
          Length = 2104

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 302  SEQLQSLFDGGSKPLDFGNTEDHALKYVS----KDDLL-KCVEKLSTIDWLASNTTKD 460
            SEQL   FD  ++P D    E   L   S    KDDLL   VE++  I+  A  T KD
Sbjct: 1866 SEQLNKKFDSSARPFDEIEMEKEVLTLKSNLAQKDDLLSSLVERIKQIEMFALKTQKD 1923

>sp|Q04322|YM52_YEAST Hypothetical 82.1 kDa protein in SGS1-MRPL24 intergenic region
          Length = 720

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
 Frame = +2

Query: 551 SQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFN-DEHV 727
           S + +  + IEVP   H  QPE          E  V E     Y++   +    N   + 
Sbjct: 3   SNEDIHEERIEVPRTPHQTQPEKDSDRIALRDEISVPEGDEKAYSDEKVEMATTNASSNF 62

Query: 728 PRSNSQMSGKSVGN-SNPNNAW---NVESENAVDDVFSSATQSEFMHSENSR 871
             + S   G+S+G  SNP+ A     +  E+    +  S   S+ + +E S+
Sbjct: 63  GSNESAKDGESIGAFSNPHEALMQSKLREESQSKTILPSDDLSQQLETEESK 114

>sp|Q9UIG0|BAZ1B_HUMAN Bromodomain adjacent to zinc finger domain protein 1B
           (Williams-Beuren syndrome chromosome region 9 protein)
           (WBRS9) (Williams syndrome transcription factor)
           (hWALP2)
          Length = 1483

 Score = 32.3 bits (72), Expect = 3.1
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 539 EITESQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFND 718
           EI E    +  K  E+P+  HSV    ++L  + L  S VQE+     T++  DS AF D
Sbjct: 666 EIAEDYGELGMKLSEIPLTLHSV----SELVRLCLRRSDVQEESEGSDTDDNKDSAAFED 721

Query: 719 EHV 727
             V
Sbjct: 722 NEV 724

>sp|P32499|NUP2_YEAST Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)
          Length = 720

 Score = 32.3 bits (72), Expect = 3.1
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
 Frame = +2

Query: 530 NTVEITESQQPVS-----------NKEIEVPIE---KHSVQPENTKLNFVFLHESLVQED 667
           +T E T+S+ P+S           N + E       KH+   +N K +FVF   +     
Sbjct: 254 STTEQTKSKNPLSLTEATKTNVDNNSKAEASFTFGTKHAADSQNNKPSFVFGQAAAKPSL 313

Query: 668 GCSKYTENGYDSGAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVD 817
             S +T         NDE+   ++         +SNP+ ++++ S+N  D
Sbjct: 314 EKSSFTFGSTTIEKKNDENSTSNSKPEKSSDSNDSNPSFSFSIPSKNTPD 363

>sp|Q8E5P8|GLMS_STRA3 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
           (Hexosephosphate aminotransferase)
           (D-fructose-6-phosphate amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-phosphate synthase)
          Length = 604

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 155 YYLLERIFENPKVQSKLISEKCMEGDDMNLLKELFNEIHISEK 283
           +Y+L+ I E P V  KLIS    E  DMN+  ++   +  +++
Sbjct: 251 FYMLKEIDEQPTVMRKLISTYANESGDMNVDSDIIKSVQEADR 293

>sp|Q8DZZ7|GLMS_STRA5 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
           (Hexosephosphate aminotransferase)
           (D-fructose-6-phosphate amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-phosphate synthase)
          Length = 604

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 155 YYLLERIFENPKVQSKLISEKCMEGDDMNLLKELFNEIHISEK 283
           +Y+L+ I E P V  KLIS    E  DMN+  ++   +  +++
Sbjct: 251 FYMLKEIDEQPTVMRKLISTYANESGDMNVDSDIIKSVQEADR 293

>sp|Q54875|IGA1B_STRPN Immunoglobulin A1 protease precursor (IgA1 protease) (IgA-specific
           zinc metalloproteinase)
          Length = 1927

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
 Frame = +2

Query: 527 ENTVEITESQQPVSNKEIEV-PIEKHSVQP-----ENTKL----NFVFLHESLVQEDGCS 676
           E  VE T+ Q P   +E+ V P E+  V P     E T +    N V   E      G  
Sbjct: 488 ETPVEKTKEQGPEKTEEVPVKPTEETPVNPNEGTTEGTSIQGAENPVQPAEDTQTNSGKI 547

Query: 677 KYTENGYDSGAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVDDVFSSATQSEFMH 856
                G  S   +D   P   S    K+   + P N+ N  SEN         T+ E  +
Sbjct: 548 ANENTGEVSNKPSDSKPPVEESNQPEKNGTATKPENSGNTTSEN-------GQTEPEPSN 600

Query: 857 SENSRNLKTRGQRQPTNG 910
             ++ ++ T+     +NG
Sbjct: 601 GNSTEDVSTKSNTSNSNG 618

>sp|P30189|TOP1_DROME DNA topoisomerase I
          Length = 972

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
 Frame = +2

Query: 527 ENTVEITESQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHE-SLVQEDGCSKYTENGYDS 703
           E+ V+I + ++  +N       +    Q    +  FV  HE S  +ED    Y ++  D+
Sbjct: 261 ESIVDIKKEEESFNNLSQASSCDYSMSQFRADEPPFVVKHEQSYAEEDSTMNYNDHDDDA 320

Query: 704 GAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVDDVFSSATQSEFMHSENSRNLKT 883
              ND+      +    K      P+   + + ++ +  +     + E +  E+    K 
Sbjct: 321 DEMNDDEEDVPLAMRKRKQEATDRPDGGMDNDDDDDIPLLARKKVKKEKIKKESKEKSKK 380

Query: 884 RGQRQPTN 907
           R + +P++
Sbjct: 381 RVKEEPSD 388

>sp|Q9NSY1|BMP2K_HUMAN BMP-2 inducible protein kinase (BIKe)
          Length = 1161

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
 Frame = +2

Query: 584 VPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFNDEHVPRSNSQMSGKSV 763
           VP   HS  PE         H S+ QE+G +   +NG  S A  D+   +  S       
Sbjct: 681 VPFISHSGSPEKKAE-----HSSINQENGTANPIKNGKTSPASKDQRTGKKTSVQGQVQK 735

Query: 764 GN--------SNPNNAWNVESENAVDDVFSSATQSEF 850
           GN        S+P +  + E E   D+      Q +F
Sbjct: 736 GNDESESDFESDPPSPKSSEEEEQDDEEVLQGEQGDF 772

>sp|Q27913|GBP_PSESE Growth-blocking peptide precursor (GBP)
          Length = 143

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +2

Query: 245 LKELFNEIHISEKGNWKKCSEQLQSLFDGGSKPLDFGNTEDHALKYVSKDDLLKCVEKLS 424
           LK+LF +IH S  G   K  E L SLF    K     N     + +   ++     +K  
Sbjct: 24  LKDLFGKIHDSVHGTADKVKEDLNSLFHPNDKNQQGNNDASSNIHFADSEENTDAAKKPD 83

Query: 425 TIDWLASNTT 454
            +    + TT
Sbjct: 84  EVTPATTTTT 93

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,318,780
Number of Sequences: 369166
Number of extensions: 2330097
Number of successful extensions: 6198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6175
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 15051136225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00271

Planaria EST Database

DrC_00271

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail