Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_I20
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14157|MYO3_SCHPO Myosin type II heavy chain 2 33 0.81
sp|Q04322|YM52_YEAST Hypothetical 82.1 kDa protein in SGS1-... 33 1.1
sp|Q9UIG0|BAZ1B_HUMAN Bromodomain adjacent to zinc finger d... 32 1.8
sp|P32499|NUP2_YEAST Nucleoporin NUP2 (Nuclear pore protein... 32 1.8
sp|Q8E5P8|GLMS_STRA3 Glucosamine--fructose-6-phosphate amin... 32 2.4
sp|Q8DZZ7|GLMS_STRA5 Glucosamine--fructose-6-phosphate amin... 32 2.4
sp|Q9NSY1|BMP2K_HUMAN BMP-2 inducible protein kinase (BIKe) 32 3.1
sp|Q27913|GBP_PSESE Growth-blocking peptide precursor (GBP) 32 3.1
sp|O96651|TOP3B_DROME DNA topoisomerase III beta 30 9.0
sp|Q8Y915|GLMS_LISMO Glucosamine--fructose-6-phosphate amin... 30 9.0
>sp|O14157|MYO3_SCHPO Myosin type II heavy chain 2
Length = 2104
Score = 33.5 bits (75), Expect = 0.81
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2
Query: 302 SEQLQSLFDGGSKPLDFGNTEDHALKYVS----KDDLL-KCVEKLSTIDWLASNTTKD 460
SEQL FD ++P D E L S KDDLL VE++ I+ A T KD
Sbjct: 1866 SEQLNKKFDSSARPFDEIEMEKEVLTLKSNLAQKDDLLSSLVERIKQIEMFALKTQKD 1923
>sp|Q04322|YM52_YEAST Hypothetical 82.1 kDa protein in SGS1-MRPL24 intergenic region
Length = 720
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Frame = +2
Query: 551 SQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFN-DEHV 727
S + + + IEVP H QPE E V E Y++ + N +
Sbjct: 3 SNEDIHEERIEVPRTPHQTQPEKDSDRIALRDEISVPEGDEKAYSDEKVEMATTNASSNF 62
Query: 728 PRSNSQMSGKSVGN-SNPNNAW---NVESENAVDDVFSSATQSEFMHSENSR 871
+ S G+S+G SNP+ A + E+ + S S+ + +E S+
Sbjct: 63 GSNESAKDGESIGAFSNPHEALMQSKLREESQSKTILPSDDLSQQLETEESK 114
>sp|Q9UIG0|BAZ1B_HUMAN Bromodomain adjacent to zinc finger domain protein 1B
(Williams-Beuren syndrome chromosome region 9 protein)
(WBRS9) (Williams syndrome transcription factor)
(hWALP2)
Length = 1483
Score = 32.3 bits (72), Expect = 1.8
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 539 EITESQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFND 718
EI E + K E+P+ HSV ++L + L S VQE+ T++ DS AF D
Sbjct: 666 EIAEDYGELGMKLSEIPLTLHSV----SELVRLCLRRSDVQEESEGSDTDDNKDSAAFED 721
Query: 719 EHV 727
V
Sbjct: 722 NEV 724
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)
Length = 720
Score = 32.3 bits (72), Expect = 1.8
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Frame = +2
Query: 530 NTVEITESQQPVS-----------NKEIEVPIE---KHSVQPENTKLNFVFLHESLVQED 667
+T E T+S+ P+S N + E KH+ +N K +FVF +
Sbjct: 254 STTEQTKSKNPLSLTEATKTNVDNNSKAEASFTFGTKHAADSQNNKPSFVFGQAAAKPSL 313
Query: 668 GCSKYTENGYDSGAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVD 817
S +T NDE+ ++ +SNP+ ++++ S+N D
Sbjct: 314 EKSSFTFGSTTIEKKNDENSTSNSKPEKSSDSNDSNPSFSFSIPSKNTPD 363
>sp|Q8E5P8|GLMS_STRA3 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
(Hexosephosphate aminotransferase)
(D-fructose-6-phosphate amidotransferase) (GFAT)
(L-glutamine-D-fructose-6-phosphate amidotransferase)
(Glucosamine-6-phosphate synthase)
Length = 604
Score = 32.0 bits (71), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 155 YYLLERIFENPKVQSKLISEKCMEGDDMNLLKELFNEIHISEK 283
+Y+L+ I E P V KLIS E DMN+ ++ + +++
Sbjct: 251 FYMLKEIDEQPTVMRKLISTYANESGDMNVDSDIIKSVQEADR 293
>sp|Q8DZZ7|GLMS_STRA5 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
(Hexosephosphate aminotransferase)
(D-fructose-6-phosphate amidotransferase) (GFAT)
(L-glutamine-D-fructose-6-phosphate amidotransferase)
(Glucosamine-6-phosphate synthase)
Length = 604
Score = 32.0 bits (71), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 155 YYLLERIFENPKVQSKLISEKCMEGDDMNLLKELFNEIHISEK 283
+Y+L+ I E P V KLIS E DMN+ ++ + +++
Sbjct: 251 FYMLKEIDEQPTVMRKLISTYANESGDMNVDSDIIKSVQEADR 293
>sp|Q9NSY1|BMP2K_HUMAN BMP-2 inducible protein kinase (BIKe)
Length = 1161
Score = 31.6 bits (70), Expect = 3.1
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Frame = +2
Query: 584 VPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFNDEHVPRSNSQMSGKSV 763
VP HS PE H S+ QE+G + +NG S A D+ + S
Sbjct: 681 VPFISHSGSPEKKAE-----HSSINQENGTANPIKNGKTSPASKDQRTGKKTSVQGQVQK 735
Query: 764 GN--------SNPNNAWNVESENAVDDVFSSATQSEF 850
GN S+P + + E E D+ Q +F
Sbjct: 736 GNDESESDFESDPPSPKSSEEEEQDDEEVLQGEQGDF 772
>sp|Q27913|GBP_PSESE Growth-blocking peptide precursor (GBP)
Length = 143
Score = 31.6 bits (70), Expect = 3.1
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 245 LKELFNEIHISEKGNWKKCSEQLQSLFDGGSKPLDFGNTEDHALKYVSKDDLLKCVEKLS 424
LK+LF +IH S G K E L SLF K N + + ++ +K
Sbjct: 24 LKDLFGKIHDSVHGTADKVKEDLNSLFHPNDKNQQGNNDASSNIHFADSEENTDAAKKPD 83
Query: 425 TIDWLASNTT 454
+ + TT
Sbjct: 84 EVTPATTTTT 93
>sp|O96651|TOP3B_DROME DNA topoisomerase III beta
Length = 875
Score = 30.0 bits (66), Expect = 9.0
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Frame = -1
Query: 741 EFDLGTCSSLNAPLSYPFSVY-FEHP-----------SSCTKDSCKNTKLSFVFSGCTEC 598
+FDL S+ SYPF Y + HP ++CT +C ++ + S C EC
Sbjct: 664 DFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGISSCVEC 723
Query: 597 FSIGTSISLLD--------TGC--CDSVIS 538
T + +LD GC CD +I+
Sbjct: 724 ---PTGVLVLDCTLAPTWKLGCNRCDVIIN 750
>sp|Q8Y915|GLMS_LISMO Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
(Hexosephosphate aminotransferase)
(D-fructose-6-phosphate amidotransferase) (GFAT)
(L-glutamine-D-fructose-6-phosphate amidotransferase)
(Glucosamine-6-phosphate synthase)
Length = 601
Score = 30.0 bits (66), Expect = 9.0
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 122 EASLIEFVMKTYYLLERIFENPKVQSKLISEKCMEGDDMNLLKELFNEIHISEK 283
+AS IE +Y+L+ I E P V K+I E ++N+ K + +EI S++
Sbjct: 238 DASDIEKGTYPHYMLKEIDEQPAVTRKIIQAYQDEAGEINVDKTIIDEILSSDR 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,067,818
Number of Sequences: 369166
Number of extensions: 1651246
Number of successful extensions: 4671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4660
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)