Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N04
(905 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04322|YM52_YEAST Hypothetical 82.1 kDa protein in SGS1-... 33 1.1
sp|Q9UIG0|BAZ1B_HUMAN Bromodomain adjacent to zinc finger d... 32 1.9
sp|P32499|NUP2_YEAST Nucleoporin NUP2 (Nuclear pore protein... 32 1.9
sp|Q54875|IGA1B_STRPN Immunoglobulin A1 protease precursor ... 32 2.4
sp|P30189|TOP1_DROME DNA topoisomerase I 32 3.2
sp|Q9NSY1|BMP2K_HUMAN BMP-2 inducible protein kinase (BIKe) 32 3.2
sp|O96651|TOP3B_DROME DNA topoisomerase III beta 30 9.3
>sp|Q04322|YM52_YEAST Hypothetical 82.1 kDa protein in SGS1-MRPL24 intergenic region
Length = 720
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Frame = +3
Query: 162 SQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFN-DEHV 338
S + + + IEVP H QPE E V E Y++ + N +
Sbjct: 3 SNEDIHEERIEVPRTPHQTQPEKDSDRIALRDEISVPEGDEKAYSDEKVEMATTNASSNF 62
Query: 339 PRSNSQMSGKSVGN-SNPNNAW---NVESENAVDDVFSSATQSEFMHSENSR 482
+ S G+S+G SNP+ A + E+ + S S+ + +E S+
Sbjct: 63 GSNESAKDGESIGAFSNPHEALMQSKLREESQSKTILPSDDLSQQLETEESK 114
>sp|Q9UIG0|BAZ1B_HUMAN Bromodomain adjacent to zinc finger domain protein 1B
(Williams-Beuren syndrome chromosome region 9 protein)
(WBRS9) (Williams syndrome transcription factor)
(hWALP2)
Length = 1483
Score = 32.3 bits (72), Expect = 1.9
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +3
Query: 150 EITESQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFND 329
EI E + K E+P+ HSV ++L + L S VQE+ T++ DS AF D
Sbjct: 666 EIAEDYGELGMKLSEIPLTLHSV----SELVRLCLRRSDVQEESEGSDTDDNKDSAAFED 721
Query: 330 EHV 338
V
Sbjct: 722 NEV 724
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)
Length = 720
Score = 32.3 bits (72), Expect = 1.9
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Frame = +3
Query: 141 NTVEITESQQPVS-----------NKEIEVPIE---KHSVQPENTKLNFVFLHESLVQED 278
+T E T+S+ P+S N + E KH+ +N K +FVF +
Sbjct: 254 STTEQTKSKNPLSLTEATKTNVDNNSKAEASFTFGTKHAADSQNNKPSFVFGQAAAKPSL 313
Query: 279 GCSKYTENGYDSGAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVD 428
S +T NDE+ ++ +SNP+ ++++ S+N D
Sbjct: 314 EKSSFTFGSTTIEKKNDENSTSNSKPEKSSDSNDSNPSFSFSIPSKNTPD 363
>sp|Q54875|IGA1B_STRPN Immunoglobulin A1 protease precursor (IgA1 protease) (IgA-specific
zinc metalloproteinase)
Length = 1927
Score = 32.0 bits (71), Expect = 2.4
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
Frame = +3
Query: 138 ENTVEITESQQPVSNKEIEV-PIEKHSVQP-----ENTKL----NFVFLHESLVQEDGCS 287
E VE T+ Q P +E+ V P E+ V P E T + N V E G
Sbjct: 488 ETPVEKTKEQGPEKTEEVPVKPTEETPVNPNEGTTEGTSIQGAENPVQPAEDTQTNSGKI 547
Query: 288 KYTENGYDSGAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVDDVFSSATQSEFMH 467
G S +D P S K+ + P N+ N SEN T+ E +
Sbjct: 548 ANENTGEVSNKPSDSKPPVEESNQPEKNGTATKPENSGNTTSEN-------GQTEPEPSN 600
Query: 468 SENSRNLKTRGQRQPTNG 521
++ ++ T+ +NG
Sbjct: 601 GNSTEDVSTKSNTSNSNG 618
>sp|P30189|TOP1_DROME DNA topoisomerase I
Length = 972
Score = 31.6 bits (70), Expect = 3.2
Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Frame = +3
Query: 138 ENTVEITESQQPVSNKEIEVPIEKHSVQPENTKLNFVFLHE-SLVQEDGCSKYTENGYDS 314
E+ V+I + ++ +N + Q + FV HE S +ED Y ++ D+
Sbjct: 261 ESIVDIKKEEESFNNLSQASSCDYSMSQFRADEPPFVVKHEQSYAEEDSTMNYNDHDDDA 320
Query: 315 GAFNDEHVPRSNSQMSGKSVGNSNPNNAWNVESENAVDDVFSSATQSEFMHSENSRNLKT 494
ND+ + K P+ + + ++ + + + E + E+ K
Sbjct: 321 DEMNDDEEDVPLAMRKRKQEATDRPDGGMDNDDDDDIPLLARKKVKKEKIKKESKEKSKK 380
Query: 495 RGQRQPTN 518
R + +P++
Sbjct: 381 RVKEEPSD 388
>sp|Q9NSY1|BMP2K_HUMAN BMP-2 inducible protein kinase (BIKe)
Length = 1161
Score = 31.6 bits (70), Expect = 3.2
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Frame = +3
Query: 195 VPIEKHSVQPENTKLNFVFLHESLVQEDGCSKYTENGYDSGAFNDEHVPRSNSQMSGKSV 374
VP HS PE H S+ QE+G + +NG S A D+ + S
Sbjct: 681 VPFISHSGSPEKKAE-----HSSINQENGTANPIKNGKTSPASKDQRTGKKTSVQGQVQK 735
Query: 375 GN--------SNPNNAWNVESENAVDDVFSSATQSEF 461
GN S+P + + E E D+ Q +F
Sbjct: 736 GNDESESDFESDPPSPKSSEEEEQDDEEVLQGEQGDF 772
>sp|O96651|TOP3B_DROME DNA topoisomerase III beta
Length = 875
Score = 30.0 bits (66), Expect = 9.3
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Frame = -2
Query: 352 EFDLGTCSSLNAPLSYPFSVY-FEHP-----------SSCTKDSCKNTKLSFVFSGCTEC 209
+FDL S+ SYPF Y + HP ++CT +C ++ + S C EC
Sbjct: 664 DFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGCNTCTNANCPHSLNTLGISSCVEC 723
Query: 208 FSIGTSISLLD--------TGC--CDSVIS 149
T + +LD GC CD +I+
Sbjct: 724 ---PTGVLVLDCTLAPTWKLGCNRCDVIIN 750
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,513,606
Number of Sequences: 369166
Number of extensions: 1582968
Number of successful extensions: 4140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4120
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)