Planaria EST Database

DrC_00265

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00265
         (924 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26599|PTBP1_HUMAN  Polypyrimidine tract-binding protein ...   162   2e-39
sp|Q00438|PTBP1_RAT  Polypyrimidine tract-binding protein 1 ...   160   4e-39
sp|Q29099|PTBP1_PIG  Polypyrimidine tract-binding protein 1 ...   159   8e-39
sp|Q8BHD7|ROD1_MOUSE  Regulator of differentiation 1 (Rod1)       155   2e-37
sp|O95758|ROD1_HUMAN  Regulator of differentiation 1 (Rod1)       155   2e-37
sp|Q9Z118|ROD1_RAT  Regulator of differentiation 1 (Rod1)         154   3e-37
sp|P17225|PTBP1_MOUSE  Polypyrimidine tract-binding protein ...   121   2e-27
sp|Q8WVV9|HNRLL_HUMAN  Heterogeneous nuclear ribonucleoprote...    74   6e-13
sp|Q921F4|HNRLL_MOUSE  Heterogeneous nuclear ribonucleoprote...    69   1e-11
sp|Q8R081|HNRPL_MOUSE  Heterogeneous nuclear ribonucleoprote...    67   5e-11

>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
           protein PPTB-1)
          Length = 531

 Score =  162 bits (409), Expect = 2e-39
 Identities = 87/173 (50%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VYGDVQRVKIL+NKK  AL+Q  DG  A  A+++LN   L+GKP+R+  SKH ++ +P+ 
Sbjct: 360 VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPR- 418

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KDY NS LHRFK+  S+  QNI+PP   LHL+ +P S  E+D++ LF  + 
Sbjct: 419 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 478

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
            + K        RKMAL+QM SVE A+ ALI LH++D G +  LRVSFSK  I
Sbjct: 479 GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 531

>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding
           protein) (PYBP)
          Length = 555

 Score =  160 bits (406), Expect = 4e-39
 Identities = 86/173 (49%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VYGDVQRVKIL+NKK  AL++  DG  A  A+++LN   L+GK +R+  SKH S+ +P+ 
Sbjct: 384 VYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPR- 442

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KDY +S LHRFK+  S+  QNI+PP   LHL+ +P S  EDD+++LF  + 
Sbjct: 443 EGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNG 502

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
            + K        RKMAL+QM SVE A+ ALI+LH++D G +  LRVSFSK  I
Sbjct: 503 GVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 555

>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  159 bits (403), Expect = 8e-39
 Identities = 88/173 (50%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VY DVQRVKIL+NKK  AL+Q  DG  A  A+++LN   L+GKP+R+  SKH ++ +P+ 
Sbjct: 386 VYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPR- 444

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KDY NS LHRFK+  S+  QNI+PP   LHL+ +P S  E+D++ LF  + 
Sbjct: 445 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNG 504

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
            I K        RKMAL+QM SVE AI ALI LH++D G +  LRVSFSK  I
Sbjct: 505 GIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI 557

>sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 (Rod1)
          Length = 523

 Score =  155 bits (391), Expect = 2e-37
 Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VYGDV RVKI++NKK  AL+Q  D   A  A+ +L+   LYGK +R   SKH ++ +P+ 
Sbjct: 352 VYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPR- 410

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KD+SNS LHRFK+  S+  QNI+PP   LHL+ +P S   DD++NLF E  
Sbjct: 411 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAG 470

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
              K        RKMAL+Q+ SVE AI ALI+LH++D G +  LRVSFSK  I
Sbjct: 471 CSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

>sp|O95758|ROD1_HUMAN Regulator of differentiation 1 (Rod1)
          Length = 521

 Score =  155 bits (391), Expect = 2e-37
 Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VYGDV RVKI++NKK  AL+Q  D   A  A+ +L+   LYGK +R   SKH ++ +P+ 
Sbjct: 350 VYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPR- 408

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KD+SNS LHRFK+  S+  QNI+PP   LHL+ +P S   DD++NLF E  
Sbjct: 409 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAG 468

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
              K        RKMAL+Q+ SVE AI ALI+LH++D G +  LRVSFSK  I
Sbjct: 469 CSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 521

>sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 (Rod1)
          Length = 523

 Score =  154 bits (390), Expect = 3e-37
 Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VYGDV RVKI++NKK  AL+Q  D   A  A+ +L+   LYGK +R   SKH ++ +P+ 
Sbjct: 352 VYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPR- 410

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KD+SNS LHRFK+  S+  QNI+PP   LHL+ +P S   DD++NLF E  
Sbjct: 411 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAG 470

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
              K        RKMAL+Q+ SVE AI ALI+LH++D G +  LRVSFSK  I
Sbjct: 471 CSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI 523

>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score =  121 bits (304), Expect = 2e-27
 Identities = 75/173 (43%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           VYGDVQRVKIL+NKK  AL+Q  DG  A   +      +   + +  +++   S      
Sbjct: 358 VYGDVQRVKILFNKKENALVQMADGSQAQ--LGEPPERAQAAREVSAHYTVQASECAAAR 415

Query: 524 EEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLF-EDF 700
           E Q    L KDY +S L RFK+  S+  QNI+PP   LHL+ +P S  EDD+++LF  + 
Sbjct: 416 EGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNG 474

Query: 701 VITKVKMINPNQRKMALVQMESVEMAIDALIKLHDYDAGSS-KLRVSFSKGFI 856
            + K        RKMAL+QM SVE A+ ALI+LH++D G +  LRVSFSK  I
Sbjct: 475 GVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSKSTI 527

>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like (Stromal
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 73.9 bits (180), Expect = 6e-13
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSK-HTSISMPK 520
           +YG++++VK +     TAL++  D     RAVT+LNNV L+GK + V  SK H+ +    
Sbjct: 358 LYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQI 417

Query: 521 PEEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLFED- 697
            E ++     KD++ S+ +RF  A   +   I PP  VLH   +P    E+    L  D 
Sbjct: 418 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 477

Query: 698 ----FVITKVKMINPNQRKMA-LVQMESVEMAIDALIKLHDY 808
               F+  KV    P+ + ++ L++ E    A++AL  L+ Y
Sbjct: 478 EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHY 519

>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like
          Length = 591

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSK-HTSISMPK 520
           +YG++++VK +     TAL++  D     RAVT+LNNV L+GK + V  SK H+ +    
Sbjct: 407 LYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQI 466

Query: 521 PEEQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLFED- 697
            E ++     KD++ S+ +RF  A   +   I PP  VLH   +P    E+    L  D 
Sbjct: 467 FELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDH 526

Query: 698 ----FVITKVKMINPNQRKMA-LVQMESVEMAIDALIKLHDY 808
               F+  KV     + + ++ L++ +    A++AL  L+ Y
Sbjct: 527 EVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHY 568

>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 555

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
 Frame = +2

Query: 344 VYGDVQRVKILYNKKNTALIQFVDGEHASRAVTNLNNVSLYGKPMRVNFSKHTSISMPKP 523
           +YG+V++VK + +K   A+++  DG    RA+T+LNN  ++G+ M V  SK  +I MP  
Sbjct: 371 LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI-MPGQ 429

Query: 524 E---EQNSVHLNKDYSNSRLHRFKRATSRTVQNIYPPGTVLHLAGLPDSFEEDDVRNLFE 694
               E  S    KD+S SR +RF          I  P  VLH    P    E++   + +
Sbjct: 430 SYGLEDGSCSY-KDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD 488

Query: 695 DFVI---TKVKMINPNQRKMA--LVQMESVEMAIDALIKLHDY 808
           +  +   T VK+ +    + +  L++ +S   A++ L  L+ Y
Sbjct: 489 ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHY 531

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,904,449
Number of Sequences: 369166
Number of extensions: 1706837
Number of successful extensions: 4011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3988
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00265

  1. Dr_sW_007_H05
  2. Dr_sW_017_N18
  3. Dr_sW_019_P23