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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00263
         (388 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90YK5|HPSE_CHICK  Heparanase precursor                         31   1.00 
sp|Q7N622|SYN_PHOLL  Asparaginyl-tRNA synthetase (Asparagine...    28   6.5  
sp|P83122|GLB1_PHEHI  Globin I, extracellular (Erythrocruorin)     28   8.4  

>sp|Q90YK5|HPSE_CHICK Heparanase precursor
          Length = 523

 Score = 30.8 bits (68), Expect = 1.00
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 DHTWETRIVSMFRTKSSFHQWPSF 241
           D TWE +++S F+ K     WPSF
Sbjct: 89  DSTWEEKVLSEFQAKDVCEAWPSF 112

>sp|Q7N622|SYN_PHOLL Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 78  KSFVKIGNDVFSAEAAIEVKVSLNGQCYLCSIT 176
           K  V    D F  EA + V   LNG+ Y C+++
Sbjct: 192 KGEVDFNQDFFGREAFLTVSGQLNGEAYACALS 224

>sp|P83122|GLB1_PHEHI Globin I, extracellular (Erythrocruorin)
          Length = 140

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 161 FVLDHTWETRIVSMFRTKSSFHQWPSFL 244
           F + H W+T      RT+ S H W  FL
Sbjct: 8   FKVKHQWQTVFSEAHRTEFSLHFWKEFL 35

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,750,152
Number of Sequences: 369166
Number of extensions: 577708
Number of successful extensions: 1149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_007_H02
2. Dr_sW_016_M07
3. Dr_sW_024_B13
4. Dr_sW_026_H10
5. Dr_sW_001_J19
6. Dr_sW_009_K17
7. Dr_sW_010_D04
8. Dr_sW_019_H13