Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_D04
(370 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YK5|HPSE_CHICK Heparanase precursor 31 1.0
sp|Q7N622|SYN_PHOLL Asparaginyl-tRNA synthetase (Asparagine... 28 6.6
sp|P83122|GLB1_PHEHI Globin I, extracellular (Erythrocruorin) 28 8.6
>sp|Q90YK5|HPSE_CHICK Heparanase precursor
Length = 523
Score = 30.8 bits (68), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 169 DHTWETRIVSMFRTKSSFHQWPSF 240
D TWE +++S F+ K WPSF
Sbjct: 89 DSTWEEKVLSEFQAKDVCEAWPSF 112
>sp|Q7N622|SYN_PHOLL Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
Length = 466
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 77 KSFVKIGNDVFSAEAAIEVKVSLNGQCYLCSIT 175
K V D F EA + V LNG+ Y C+++
Sbjct: 192 KGEVDFNQDFFGREAFLTVSGQLNGEAYACALS 224
>sp|P83122|GLB1_PHEHI Globin I, extracellular (Erythrocruorin)
Length = 140
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 160 FVLDHTWETRIVSMFRTKSSFHQWPSFL 243
F + H W+T RT+ S H W FL
Sbjct: 8 FKVKHQWQTVFSEAHRTEFSLHFWKEFL 35
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,271,238
Number of Sequences: 369166
Number of extensions: 566467
Number of successful extensions: 1144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)