DrC_00256
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00256 (1131 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin) 465 e-130 sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin) 461 e-129 sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding ... 458 e-128 sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein) 457 e-128 sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b ... 408 e-113 sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin) 240 5e-63 sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding ... 239 1e-62 sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding pr... 239 1e-62 sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a ... 237 4e-62 sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin) 235 2e-61
>sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin) Length = 462 Score = 465 bits (1196), Expect = e-130 Identities = 224/282 (79%), Positives = 262/282 (92%) Frame = +2 Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181 T+IA SEI+SLEMSKTE+LTQAFR+SIG+RIKE+TE+IEGEVVE+QIDRPATGTGAK GK Sbjct: 100 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEVQIDRPATGTGAKVGK 159 Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361 + LKTTEMET++DLG KMIES+ KEK+Q+GD+I IDK +G++T+LGR+FT+ARDYDA G+ Sbjct: 160 LTLKTTEMETIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMGS 219 Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541 QTKFVQCP+GE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV Sbjct: 220 QTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 279 Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721 AEWREEG+AE++PGVLFIDEVHMLD+ECFSFLNRALESDMAPVL+MATNRG+T IRGT Sbjct: 280 AEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDMAPVLIMATNRGITRIRGTNY 339 Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 +SPHGIP DLLDRLLIIST PY + E QILKIRCEEEDV++ Sbjct: 340 QSPHGIPIDLLDRLLIISTSPYNEKETKQILKIRCEEEDVDM 381
Score = 105 bits (263), Expect = 2e-22
Identities = 50/71 (70%), Positives = 62/71 (87%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRSTQY 1028
S+DA T+LT IGLETSLRY++QLIT A+LVCRKRKG EV + D+KRVY+LF+DE RSTQY
Sbjct: 382 SEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQY 441
Query: 1029 LTEYQNEFMFD 1061
+ EYQ+ FMF+
Sbjct: 442 MKEYQDAFMFN 452
>sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin) Length = 463 Score = 461 bits (1185), Expect = e-129 Identities = 219/282 (77%), Positives = 263/282 (93%) Frame = +2 Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181 T++A SEI+SLEMSKTE+L+QAFRK+IG+RIKE+TE+IEGEVVE+QIDRPATGTGAK GK Sbjct: 101 TALAGSEIFSLEMSKTEALSQAFRKAIGVRIKEETEIIEGEVVEIQIDRPATGTGAKVGK 160 Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361 + LKTTEMET++DLG KMIES+ KE++Q+GD+I IDK +G++++LGRSFT+ARDYDA GA Sbjct: 161 LTLKTTEMETIYDLGTKMIESLSKERVQAGDVITIDKATGKISKLGRSFTRARDYDAMGA 220 Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541 QT+FVQCPEGE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV Sbjct: 221 QTQFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 280 Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721 +EWREEG+AE++PGVLFIDEVHMLD+ECFSFLNRALESD++PVL+MATNRG+T IRGT Sbjct: 281 SEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDLSPVLIMATNRGITRIRGTNY 340 Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 +SPHGIP D+LDRLLII+T PYT+ E QILKIRCEEEDVE+ Sbjct: 341 QSPHGIPIDMLDRLLIIATTPYTEKETRQILKIRCEEEDVEL 382
Score = 100 bits (249), Expect = 8e-21
Identities = 47/73 (64%), Positives = 62/73 (84%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRST 1022
+ S++A T+LT IG ETSLRYAIQLI+TA LVCRKR+G EV + D+KRVY+LF+DE RS+
Sbjct: 381 ELSEEAHTVLTRIGQETSLRYAIQLISTAGLVCRKRRGTEVQVEDIKRVYSLFLDEARSS 440
Query: 1023 QYLTEYQNEFMFD 1061
QY+ EYQ+ F+F+
Sbjct: 441 QYMKEYQDSFLFN 453
>sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding protein-interacting protein) (48-kDa TBP-interacting protein) (TIP49b) (Repressing pontin 52) (Reptin 52) (51 kDa erythrocyte cytosolic protein) (ECP-51) (TIP60-associated protein 54-beta) (TAP54-beta) Length = 463 Score = 458 bits (1179), Expect = e-128 Identities = 219/282 (77%), Positives = 262/282 (92%) Frame = +2 Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181 T+IA SEI+SLEMSKTE+LTQAFR+SIG+RIKE+TE+IEGEVVE+QIDRPATGTG+K GK Sbjct: 101 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGK 160 Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361 + LKTTEMET++DLG KMIES+ K+K+Q+GD+I IDK +G++++LGRSFT+ARDYDA G+ Sbjct: 161 LTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGS 220 Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541 QTKFVQCP+GE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV Sbjct: 221 QTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 280 Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721 AEWREEG+AE++PGVLFIDEVHMLD+E FSFLNRALESDMAPVL+MATNRG+T IRGT Sbjct: 281 AEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSY 340 Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 +SPHGIP DLLDRLLI+ST PY++ + QIL+IRCEEEDVE+ Sbjct: 341 QSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM 382
Score = 107 bits (267), Expect = 6e-23
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRST 1022
+ S+DA T+LT IGLETSLRYAIQLIT A+LVCRKRKG EV + D+KRVY+LF+DE RST
Sbjct: 381 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRST 440
Query: 1023 QYLTEYQNEFMFD 1061
QY+ EYQ+ F+F+
Sbjct: 441 QYMKEYQDAFLFN 453
>sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein) Length = 463 Score = 457 bits (1177), Expect = e-128 Identities = 219/282 (77%), Positives = 262/282 (92%) Frame = +2 Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181 T+IA SEI+SLEMSKTE+LTQAFR+SIG+RIKE+TE+IEGEVVE+QIDRPATGTG+K GK Sbjct: 101 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGK 160 Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361 + LKTTEMET++DLG KMIES+ K+K+Q+GD+I IDK +G++++LGRSFT+ARDYDA G+ Sbjct: 161 LTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGS 220 Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541 QTKFVQCP+GE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV Sbjct: 221 QTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 280 Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721 AEWREEG+AE++PGVLFIDEVHMLD+E FSFLNRALESDMAPVL+MATNRG+T IRGT Sbjct: 281 AEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSY 340 Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 +SPHGIP DLLDRLLI+ST PY++ + QIL+IRCEEEDVE+ Sbjct: 341 QSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEEEDVEM 382
Score = 107 bits (267), Expect = 6e-23
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRST 1022
+ S+DA T+LT IGLETSLRYAIQLIT A+LVCRKRKG EV + D+KRVY+LF+DE RST
Sbjct: 381 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRST 440
Query: 1023 QYLTEYQNEFMFD 1061
QY+ EYQ+ F+F+
Sbjct: 441 QYMKEYQDAFLFN 453
>sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b homolog) (TIP49-homology protein 2) Length = 471 Score = 408 bits (1049), Expect = e-113 Identities = 195/282 (69%), Positives = 245/282 (86%) Frame = +2 Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181 T+IA SEI+SLE+SKTE+LTQAFRKSIG++IKE+TE+IEGEVVE+QIDR TG G K GK Sbjct: 99 TAIAGSEIFSLELSKTEALTQAFRKSIGIKIKEETELIEGEVVEIQIDRSITG-GHKQGK 157 Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361 + +KTT+MET+++LG KMI+ + KEK+ +GD+I IDK SG++T+LGRSF ++RDYDA GA Sbjct: 158 LTIKTTDMETIYELGNKMIDGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGA 217 Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541 T+FVQCPEGE++K K VVHTV+LHEIDVINSR QG LALF+GDTGEI+SEVRDQI+ KV Sbjct: 218 DTRFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQGFLALFTGDTGEIRSEVRDQINTKV 277 Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721 AEW+EEG+AE+VPGVLFIDEVHMLD+ECFSF+NRALE + AP+++MATNRGV+ RGT Sbjct: 278 AEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTNY 337 Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 +SPHG+P DLLDR +II+T Y + EI IL IR +EE+VE+ Sbjct: 338 KSPHGLPLDLLDRSIIITTKSYNEQEIKTILSIRAQEEEVEL 379
Score = 69.7 bits (169), Expect = 1e-11
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRST 1022
+ S DAL LLT G+ETSLRY+ LI+ A + KRK V + D+KR Y LF+D RS
Sbjct: 378 ELSSDALDLLTKTGVETSLRYSSNLISVAQQIAMKRKNNTVEVEDVKRAYLLFLDSARSV 437
Query: 1023 QYLTEYQNEFMFD 1061
+Y+ E +++++ D
Sbjct: 438 KYVQENESQYIDD 450
>sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin) Length = 456 Score = 240 bits (613), Expect = 5e-63 Identities = 136/293 (46%), Positives = 191/293 (65%), Gaps = 13/293 (4%) Frame = +2 Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178 + SE+YS E+ KTE L + FR++IGLRI+E EV EGEV EL + + P G G Sbjct: 96 MVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPCETENPMGGYGKTIS 155 Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352 V+ LKT + L + ES+ KE+++ GD+I I+ SG V R GRS T A ++D Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRSDTYATEFDL 215 Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511 ++V P+G++ + KEV+ V LH++DV N+R QG +L+ L EI Sbjct: 216 --EAEEYVPLPKGDVHQKKEVIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273 Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691 ++R QI+ V ++ ++G AELVPGVLFIDEVHMLD+ECF++L+RALES +AP+++ ATNR Sbjct: 274 KLRGQINKVVNKYIDQGIAELVPGVLFIDEVHMLDIECFTYLHRALESSLAPIVIFATNR 333 Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I Sbjct: 334 GNCIIRGTEDVASPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI 386
Score = 51.2 bits (121), Expect = 5e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRSTQY 1028
S++AL L IG +T+LRY++QL+T ANL+ + + ++ + LF D K S +
Sbjct: 387 SEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEINELFYDAKSSAKI 446
Query: 1029 LTEYQNEFM 1055
L E Q +FM
Sbjct: 447 LAEQQEKFM 455
>sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associated protein 54-alpha) (TAP54-alpha) Length = 456 Score = 239 bits (609), Expect = 1e-62 Identities = 133/293 (45%), Positives = 191/293 (65%), Gaps = 13/293 (4%) Frame = +2 Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178 + SE+YS E+ KTE L + FR++IGLRIKE EV EGEV EL + + P G G Sbjct: 96 MVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155 Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352 V+ LKT + L + ES+ KE++++GD+I I+ SG V R GR T A ++D Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL 215 Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511 ++V P+G++ K KE++ V LH++DV N+R QG +L+ L EI Sbjct: 216 --EAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273 Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691 ++R +I+ V ++ ++G AELVPGVLF+DEVHMLD+ECF++L+RALES +AP+++ A+NR Sbjct: 274 KLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNR 333 Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I Sbjct: 334 GNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI 386
Score = 49.3 bits (116), Expect = 2e-05
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRSTQY 1028
S++AL L IG +T+LRY++QL+T ANL+ + + ++ + LF D K S +
Sbjct: 387 SEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKI 446
Query: 1029 LTEYQNEFM 1055
L + Q+++M
Sbjct: 447 LADQQDKYM 455
>sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (DNA helicase p50) sp|P60122|RUVB1_MOUSE RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (DNA helicase p50) Length = 456 Score = 239 bits (609), Expect = 1e-62 Identities = 133/293 (45%), Positives = 191/293 (65%), Gaps = 13/293 (4%) Frame = +2 Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178 + SE+YS E+ KTE L + FR++IGLRIKE EV EGEV EL + + P G G Sbjct: 96 MVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155 Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352 V+ LKT + L + ES+ KE++++GD+I I+ SG V R GR T A ++D Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL 215 Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511 ++V P+G++ K KE++ V LH++DV N+R QG +L+ L EI Sbjct: 216 --EAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273 Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691 ++R +I+ V ++ ++G AELVPGVLF+DEVHMLD+ECF++L+RALES +AP+++ A+NR Sbjct: 274 KLRGEINKVVNKYIDQGVAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNR 333 Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I Sbjct: 334 GNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI 386
Score = 49.3 bits (116), Expect = 2e-05
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRSTQY 1028
S++AL L IG +T+LRY++QL+T ANL+ + + ++ + LF D K S +
Sbjct: 387 SEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKI 446
Query: 1029 LTEYQNEFM 1055
L + Q+++M
Sbjct: 447 LADQQDKYM 455
>sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a homolog) (TIP49-homology protein 1) Length = 463 Score = 237 bits (605), Expect = 4e-62 Identities = 130/293 (44%), Positives = 193/293 (65%), Gaps = 13/293 (4%) Frame = +2 Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178 + SE+YS+E+ KTE+L + FR++IGLRIKE EV EGEV EL + P G G Sbjct: 105 LVGSELYSVEVKKTETLMENFRRAIGLRIKETKEVYEGEVTELTPEDAENPLGGYGKTIS 164 Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352 V+ LK+ + L + ES+ +EK+ GD+I I+ +G V R+GRS A ++D Sbjct: 165 HVIVGLKSAKGTKTLRLDPTIYESIQREKVSIGDVIYIEANTGAVKRVGRSDAYATEFDL 224 Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG-------VLALFSGDTGEIKS 511 ++V P+GE+ K KE+V V LH++DV N+R QG + L EI Sbjct: 225 --ETEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDVISMMGQLLKPKKTEITE 282 Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691 ++R +++ VA++ ++G AEL+PGVLFIDEV+MLD+E F++LN+ALES++APV+V+A+NR Sbjct: 283 KLRQEVNKVVAKYIDQGVAELIPGVLFIDEVNMLDIEIFTYLNKALESNIAPVVVLASNR 342 Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 G+T +RGT+ SPHG+P DL+DRLLI+ T+PY KDEI I++ R E +++ Sbjct: 343 GMTTVRGTEDVISPHGVPPDLIDRLLIVRTLPYDKDEIRTIIERRATVERLQV 395
Score = 50.8 bits (120), Expect = 7e-06
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +3
Query: 858 ALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRSTQYLTE 1037
AL LL ++G ETSLRYA+QL+ ++ + +E+ + D+ LF+D KRST+ L
Sbjct: 399 ALDLLATMGTETSLRYALQLLAPCGILAQTSNRKEIVVNDVNEAKLLFLDAKRSTKILET 458
Query: 1038 YQN 1046
N
Sbjct: 459 SAN 461
>sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin) Length = 456 Score = 235 bits (599), Expect = 2e-61 Identities = 134/293 (45%), Positives = 190/293 (64%), Gaps = 13/293 (4%) Frame = +2 Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178 + SE+YS E+ KTE L + FR++IGLRIKE EV EGEV EL + + P G G Sbjct: 96 MVGSEVYSSEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155 Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352 V+ LKT + L + ES+ KE+++ GD+I I+ SG V R GR T A ++D Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRCDTFATEFDL 215 Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511 ++V P+G++ + KE++ V LH++DV N+R QG +L+ L EI Sbjct: 216 --EAEEYVPLPKGDVHEKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273 Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691 ++R +I+ V ++ ++G AELVPGVLFIDEVHMLD+ECF++L+RALES +AP++V A+NR Sbjct: 274 KLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHRALESSIAPIVVFASNR 333 Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847 G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I Sbjct: 334 GNCLIRGTEDISSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGLNI 386
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKRVYTLFMDEKRSTQY 1028
S++AL+ L IG +T+LRYA+QL+T A+L+ R + + V ++ + LF D K S +
Sbjct: 387 SEEALSHLGEIGTKTTLRYAVQLLTPASLLARVQGREVVEKEHVEEINELFYDAKSSAKI 446
Query: 1029 LTEYQNEFM 1055
L + +FM
Sbjct: 447 LQDQHTKFM 455
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,160,295
Number of Sequences: 369166
Number of extensions: 2157813
Number of successful extensions: 6406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6384
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12583470240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
