Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_E08
(936 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin) 465 e-131
sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin) 461 e-129
sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding ... 458 e-129
sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein) 457 e-128
sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b ... 408 e-113
sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin) 240 4e-63
sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding ... 239 1e-62
sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding pr... 239 1e-62
sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a ... 237 3e-62
sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin) 235 2e-61
>sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin)
Length = 462
Score = 465 bits (1196), Expect = e-131
Identities = 224/282 (79%), Positives = 262/282 (92%)
Frame = +2
Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181
T+IA SEI+SLEMSKTE+LTQAFR+SIG+RIKE+TE+IEGEVVE+QIDRPATGTGAK GK
Sbjct: 100 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEVQIDRPATGTGAKVGK 159
Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361
+ LKTTEMET++DLG KMIES+ KEK+Q+GD+I IDK +G++T+LGR+FT+ARDYDA G+
Sbjct: 160 LTLKTTEMETIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMGS 219
Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541
QTKFVQCP+GE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV
Sbjct: 220 QTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 279
Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721
AEWREEG+AE++PGVLFIDEVHMLD+ECFSFLNRALESDMAPVL+MATNRG+T IRGT
Sbjct: 280 AEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDMAPVLIMATNRGITRIRGTNY 339
Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
+SPHGIP DLLDRLLIIST PY + E QILKIRCEEEDV++
Sbjct: 340 QSPHGIPIDLLDRLLIISTSPYNEKETKQILKIRCEEEDVDM 381
Score = 43.9 bits (102), Expect = 7e-04
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANL 935
S+DA T+LT IGLETSLRY++QLIT A+L
Sbjct: 382 SEDAYTVLTRIGLETSLRYSMQLITAASL 410
>sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin)
Length = 463
Score = 461 bits (1185), Expect = e-129
Identities = 219/282 (77%), Positives = 263/282 (93%)
Frame = +2
Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181
T++A SEI+SLEMSKTE+L+QAFRK+IG+RIKE+TE+IEGEVVE+QIDRPATGTGAK GK
Sbjct: 101 TALAGSEIFSLEMSKTEALSQAFRKAIGVRIKEETEIIEGEVVEIQIDRPATGTGAKVGK 160
Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361
+ LKTTEMET++DLG KMIES+ KE++Q+GD+I IDK +G++++LGRSFT+ARDYDA GA
Sbjct: 161 LTLKTTEMETIYDLGTKMIESLSKERVQAGDVITIDKATGKISKLGRSFTRARDYDAMGA 220
Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541
QT+FVQCPEGE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV
Sbjct: 221 QTQFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 280
Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721
+EWREEG+AE++PGVLFIDEVHMLD+ECFSFLNRALESD++PVL+MATNRG+T IRGT
Sbjct: 281 SEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDLSPVLIMATNRGITRIRGTNY 340
Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
+SPHGIP D+LDRLLII+T PYT+ E QILKIRCEEEDVE+
Sbjct: 341 QSPHGIPIDMLDRLLIIATTPYTEKETRQILKIRCEEEDVEL 382
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANL 935
+ S++A T+LT IG ETSLRYAIQLI+TA L
Sbjct: 381 ELSEEAHTVLTRIGQETSLRYAIQLISTAGL 411
>sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding protein-interacting protein)
(48-kDa TBP-interacting protein) (TIP49b) (Repressing
pontin 52) (Reptin 52) (51 kDa erythrocyte cytosolic
protein) (ECP-51) (TIP60-associated protein 54-beta)
(TAP54-beta)
Length = 463
Score = 458 bits (1179), Expect = e-129
Identities = 219/282 (77%), Positives = 262/282 (92%)
Frame = +2
Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181
T+IA SEI+SLEMSKTE+LTQAFR+SIG+RIKE+TE+IEGEVVE+QIDRPATGTG+K GK
Sbjct: 101 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGK 160
Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361
+ LKTTEMET++DLG KMIES+ K+K+Q+GD+I IDK +G++++LGRSFT+ARDYDA G+
Sbjct: 161 LTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGS 220
Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541
QTKFVQCP+GE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV
Sbjct: 221 QTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 280
Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721
AEWREEG+AE++PGVLFIDEVHMLD+E FSFLNRALESDMAPVL+MATNRG+T IRGT
Sbjct: 281 AEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSY 340
Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
+SPHGIP DLLDRLLI+ST PY++ + QIL+IRCEEEDVE+
Sbjct: 341 QSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM 382
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANL 935
+ S+DA T+LT IGLETSLRYAIQLIT A+L
Sbjct: 381 EMSEDAYTVLTRIGLETSLRYAIQLITAASL 411
>sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein)
Length = 463
Score = 457 bits (1177), Expect = e-128
Identities = 219/282 (77%), Positives = 262/282 (92%)
Frame = +2
Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181
T+IA SEI+SLEMSKTE+LTQAFR+SIG+RIKE+TE+IEGEVVE+QIDRPATGTG+K GK
Sbjct: 101 TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGK 160
Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361
+ LKTTEMET++DLG KMIES+ K+K+Q+GD+I IDK +G++++LGRSFT+ARDYDA G+
Sbjct: 161 LTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGS 220
Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541
QTKFVQCP+GE++K KEVVHTV+LHEIDVINSR QG LALFSGDTGEIKSEVR+QI+AKV
Sbjct: 221 QTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 280
Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721
AEWREEG+AE++PGVLFIDEVHMLD+E FSFLNRALESDMAPVL+MATNRG+T IRGT
Sbjct: 281 AEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSY 340
Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
+SPHGIP DLLDRLLI+ST PY++ + QIL+IRCEEEDVE+
Sbjct: 341 QSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEEEDVEM 382
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTANL 935
+ S+DA T+LT IGLETSLRYAIQLIT A+L
Sbjct: 381 EMSEDAYTVLTRIGLETSLRYAIQLITAASL 411
>sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b homolog) (TIP49-homology
protein 2)
Length = 471
Score = 408 bits (1049), Expect = e-113
Identities = 195/282 (69%), Positives = 245/282 (86%)
Frame = +2
Query: 2 TSIAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVELQIDRPATGTGAKTGK 181
T+IA SEI+SLE+SKTE+LTQAFRKSIG++IKE+TE+IEGEVVE+QIDR TG G K GK
Sbjct: 99 TAIAGSEIFSLELSKTEALTQAFRKSIGIKIKEETELIEGEVVEIQIDRSITG-GHKQGK 157
Query: 182 VVLKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDACGA 361
+ +KTT+MET+++LG KMI+ + KEK+ +GD+I IDK SG++T+LGRSF ++RDYDA GA
Sbjct: 158 LTIKTTDMETIYELGNKMIDGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGA 217
Query: 362 QTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQGVLALFSGDTGEIKSEVRDQIDAKV 541
T+FVQCPEGE++K K VVHTV+LHEIDVINSR QG LALF+GDTGEI+SEVRDQI+ KV
Sbjct: 218 DTRFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQGFLALFTGDTGEIRSEVRDQINTKV 277
Query: 542 AEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ 721
AEW+EEG+AE+VPGVLFIDEVHMLD+ECFSF+NRALE + AP+++MATNRGV+ RGT
Sbjct: 278 AEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTNY 337
Query: 722 RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
+SPHG+P DLLDR +II+T Y + EI IL IR +EE+VE+
Sbjct: 338 KSPHGLPLDLLDRSIIITTKSYNEQEIKTILSIRAQEEEVEL 379
Score = 35.0 bits (79), Expect = 0.30
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 843 KFSDDALTLLTSIGLETSLRYAIQLITTA 929
+ S DAL LLT G+ETSLRY+ LI+ A
Sbjct: 378 ELSSDALDLLTKTGVETSLRYSSNLISVA 406
>sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin)
Length = 456
Score = 240 bits (613), Expect = 4e-63
Identities = 136/293 (46%), Positives = 191/293 (65%), Gaps = 13/293 (4%)
Frame = +2
Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178
+ SE+YS E+ KTE L + FR++IGLRI+E EV EGEV EL + + P G G
Sbjct: 96 MVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPCETENPMGGYGKTIS 155
Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352
V+ LKT + L + ES+ KE+++ GD+I I+ SG V R GRS T A ++D
Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRSDTYATEFDL 215
Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511
++V P+G++ + KEV+ V LH++DV N+R QG +L+ L EI
Sbjct: 216 --EAEEYVPLPKGDVHQKKEVIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273
Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691
++R QI+ V ++ ++G AELVPGVLFIDEVHMLD+ECF++L+RALES +AP+++ ATNR
Sbjct: 274 KLRGQINKVVNKYIDQGIAELVPGVLFIDEVHMLDIECFTYLHRALESSLAPIVIFATNR 333
Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I
Sbjct: 334 GNCIIRGTEDVASPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI 386
Score = 35.4 bits (80), Expect = 0.23
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANL 935
S++AL L IG +T+LRY++QL+T ANL
Sbjct: 387 SEEALNHLGEIGTKTTLRYSVQLLTPANL 415
>sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(Nuclear matrix protein 238) (NMP 238) (54 kDa
erythrocyte cytosolic protein) (ECP-54)
(TIP60-associated protein 54-alpha) (TAP54-alpha)
Length = 456
Score = 239 bits (609), Expect = 1e-62
Identities = 133/293 (45%), Positives = 191/293 (65%), Gaps = 13/293 (4%)
Frame = +2
Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178
+ SE+YS E+ KTE L + FR++IGLRIKE EV EGEV EL + + P G G
Sbjct: 96 MVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155
Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352
V+ LKT + L + ES+ KE++++GD+I I+ SG V R GR T A ++D
Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL 215
Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511
++V P+G++ K KE++ V LH++DV N+R QG +L+ L EI
Sbjct: 216 --EAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273
Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691
++R +I+ V ++ ++G AELVPGVLF+DEVHMLD+ECF++L+RALES +AP+++ A+NR
Sbjct: 274 KLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNR 333
Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I
Sbjct: 334 GNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI 386
Score = 35.4 bits (80), Expect = 0.23
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANL 935
S++AL L IG +T+LRY++QL+T ANL
Sbjct: 387 SEEALNHLGEIGTKTTLRYSVQLLTPANL 415
>sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(DNA helicase p50)
sp|P60122|RUVB1_MOUSE RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(DNA helicase p50)
Length = 456
Score = 239 bits (609), Expect = 1e-62
Identities = 133/293 (45%), Positives = 191/293 (65%), Gaps = 13/293 (4%)
Frame = +2
Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178
+ SE+YS E+ KTE L + FR++IGLRIKE EV EGEV EL + + P G G
Sbjct: 96 MVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155
Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352
V+ LKT + L + ES+ KE++++GD+I I+ SG V R GR T A ++D
Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL 215
Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511
++V P+G++ K KE++ V LH++DV N+R QG +L+ L EI
Sbjct: 216 --EAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273
Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691
++R +I+ V ++ ++G AELVPGVLF+DEVHMLD+ECF++L+RALES +AP+++ A+NR
Sbjct: 274 KLRGEINKVVNKYIDQGVAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNR 333
Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I
Sbjct: 334 GNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINI 386
Score = 35.4 bits (80), Expect = 0.23
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANL 935
S++AL L IG +T+LRY++QL+T ANL
Sbjct: 387 SEEALNHLGEIGTKTTLRYSVQLLTPANL 415
>sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a homolog) (TIP49-homology
protein 1)
Length = 463
Score = 237 bits (605), Expect = 3e-62
Identities = 130/293 (44%), Positives = 193/293 (65%), Gaps = 13/293 (4%)
Frame = +2
Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178
+ SE+YS+E+ KTE+L + FR++IGLRIKE EV EGEV EL + P G G
Sbjct: 105 LVGSELYSVEVKKTETLMENFRRAIGLRIKETKEVYEGEVTELTPEDAENPLGGYGKTIS 164
Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352
V+ LK+ + L + ES+ +EK+ GD+I I+ +G V R+GRS A ++D
Sbjct: 165 HVIVGLKSAKGTKTLRLDPTIYESIQREKVSIGDVIYIEANTGAVKRVGRSDAYATEFDL 224
Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG-------VLALFSGDTGEIKS 511
++V P+GE+ K KE+V V LH++DV N+R QG + L EI
Sbjct: 225 --ETEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDVISMMGQLLKPKKTEITE 282
Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691
++R +++ VA++ ++G AEL+PGVLFIDEV+MLD+E F++LN+ALES++APV+V+A+NR
Sbjct: 283 KLRQEVNKVVAKYIDQGVAELIPGVLFIDEVNMLDIEIFTYLNKALESNIAPVVVLASNR 342
Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
G+T +RGT+ SPHG+P DL+DRLLI+ T+PY KDEI I++ R E +++
Sbjct: 343 GMTTVRGTEDVISPHGVPPDLIDRLLIVRTLPYDKDEIRTIIERRATVERLQV 395
Score = 31.6 bits (70), Expect = 3.4
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 858 ALTLLTSIGLETSLRYAIQLITTANL 935
AL LL ++G ETSLRYA+QL+ +
Sbjct: 399 ALDLLATMGTETSLRYALQLLAPCGI 424
>sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin)
Length = 456
Score = 235 bits (599), Expect = 2e-61
Identities = 134/293 (45%), Positives = 190/293 (64%), Gaps = 13/293 (4%)
Frame = +2
Query: 8 IAASEIYSLEMSKTESLTQAFRKSIGLRIKEDTEVIEGEVVEL---QIDRPATGTGAKTG 178
+ SE+YS E+ KTE L + FR++IGLRIKE EV EGEV EL + + P G G
Sbjct: 96 MVGSEVYSSEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTIS 155
Query: 179 KVV--LKTTEMETVFDLGQKMIESMLKEKIQSGDIIIIDKKSGRVTRLGRSFTKARDYDA 352
V+ LKT + L + ES+ KE+++ GD+I I+ SG V R GR T A ++D
Sbjct: 156 HVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRCDTFATEFDL 215
Query: 353 CGAQTKFVQCPEGEIEKHKEVVHTVNLHEIDVINSRAQG---VLA----LFSGDTGEIKS 511
++V P+G++ + KE++ V LH++DV N+R QG +L+ L EI
Sbjct: 216 --EAEEYVPLPKGDVHEKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITD 273
Query: 512 EVRDQIDAKVAEWREEGRAELVPGVLFIDEVHMLDVECFSFLNRALESDMAPVLVMATNR 691
++R +I+ V ++ ++G AELVPGVLFIDEVHMLD+ECF++L+RALES +AP++V A+NR
Sbjct: 274 KLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHRALESSIAPIVVFASNR 333
Query: 692 GVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDEINQILKIRCEEEDVEI 847
G IRGT+ SPHGIP DLLDR++II T+ YT E+ QI+KIR + E + I
Sbjct: 334 GNCLIRGTEDISSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGLNI 386
Score = 35.0 bits (79), Expect = 0.30
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +3
Query: 849 SDDALTLLTSIGLETSLRYAIQLITTANL 935
S++AL+ L IG +T+LRYA+QL+T A+L
Sbjct: 387 SEEALSHLGEIGTKTTLRYAVQLLTPASL 415
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,630,300
Number of Sequences: 369166
Number of extensions: 1620956
Number of successful extensions: 5321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5299
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)