Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L13
(508 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin) 226 2e-59
sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding ... 223 2e-58
sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein) 223 3e-58
sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin) 220 2e-57
sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b ... 164 1e-40
sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin) 134 1e-31
sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a ... 133 3e-31
sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding ... 130 2e-30
sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding pr... 130 2e-30
sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin) 130 2e-30
>sp|Q9DE27|RUVB2_XENLA RuvB-like 2 (Reptin)
Length = 462
Score = 226 bits (576), Expect = 2e-59
Identities = 110/146 (75%), Positives = 127/146 (86%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQRSPHGIPCDLLDRLLIISTVPYTKDEI 180
CFSFLNRALESDMAPVL+MATNRG+T IRGT +SPHGIP DLLDRLLIIST PY + E
Sbjct: 307 CFSFLNRALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKET 366
Query: 181 NQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLK 360
QILKIRCEEEDV+ S+DA T+LT IGLETSLRY++QLIT A+LVCRKRKG EV + D+K
Sbjct: 367 KQILKIRCEEEDVDMSEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDIK 426
Query: 361 RVYTLFMDEKRSTQYLTEYQNEFMFD 438
RVY+LF+DE RSTQY+ EYQ+ FMF+
Sbjct: 427 RVYSLFLDESRSTQYMKEYQDAFMFN 452
>sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 (48-kDa TATA box-binding protein-interacting protein)
(48-kDa TBP-interacting protein) (TIP49b) (Repressing
pontin 52) (Reptin 52) (51 kDa erythrocyte cytosolic
protein) (ECP-51) (TIP60-associated protein 54-beta)
(TAP54-beta)
Length = 463
Score = 223 bits (569), Expect = 2e-58
Identities = 108/145 (74%), Positives = 127/145 (87%)
Frame = +1
Query: 4 FSFLNRALESDMAPVLVMATNRGVTNIRGTKQRSPHGIPCDLLDRLLIISTVPYTKDEIN 183
FSFLNRALESDMAPVL+MATNRG+T IRGT +SPHGIP DLLDRLLI+ST PY++ +
Sbjct: 309 FSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTK 368
Query: 184 QILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKR 363
QIL+IRCEEEDVE S+DA T+LT IGLETSLRYAIQLIT A+LVCRKRKG EV + D+KR
Sbjct: 369 QILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKR 428
Query: 364 VYTLFMDEKRSTQYLTEYQNEFMFD 438
VY+LF+DE RSTQY+ EYQ+ F+F+
Sbjct: 429 VYSLFLDESRSTQYMKEYQDAFLFN 453
>sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 (p47 protein)
Length = 463
Score = 223 bits (567), Expect = 3e-58
Identities = 108/145 (74%), Positives = 127/145 (87%)
Frame = +1
Query: 4 FSFLNRALESDMAPVLVMATNRGVTNIRGTKQRSPHGIPCDLLDRLLIISTVPYTKDEIN 183
FSFLNRALESDMAPVL+MATNRG+T IRGT +SPHGIP DLLDRLLI+ST PY++ +
Sbjct: 309 FSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTK 368
Query: 184 QILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLKR 363
QIL+IRCEEEDVE S+DA T+LT IGLETSLRYAIQLIT A+LVCRKRKG EV + D+KR
Sbjct: 369 QILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKR 428
Query: 364 VYTLFMDEKRSTQYLTEYQNEFMFD 438
VY+LF+DE RSTQY+ EYQ+ F+F+
Sbjct: 429 VYSLFLDESRSTQYMKEYQDAFLFN 453
>sp|P83571|RUVB2_BRARE RuvB-like 2 (Reptin) (zReptin)
Length = 463
Score = 220 bits (560), Expect = 2e-57
Identities = 105/146 (71%), Positives = 127/146 (86%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQRSPHGIPCDLLDRLLIISTVPYTKDEI 180
CFSFLNRALESD++PVL+MATNRG+T IRGT +SPHGIP D+LDRLLII+T PYT+ E
Sbjct: 308 CFSFLNRALESDLSPVLIMATNRGITRIRGTNYQSPHGIPIDMLDRLLIIATTPYTEKET 367
Query: 181 NQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLK 360
QILKIRCEEEDVE S++A T+LT IG ETSLRYAIQLI+TA LVCRKR+G EV + D+K
Sbjct: 368 RQILKIRCEEEDVELSEEAHTVLTRIGQETSLRYAIQLISTAGLVCRKRRGTEVQVEDIK 427
Query: 361 RVYTLFMDEKRSTQYLTEYQNEFMFD 438
RVY+LF+DE RS+QY+ EYQ+ F+F+
Sbjct: 428 RVYSLFLDEARSSQYMKEYQDSFLFN 453
>sp|Q12464|RUVB2_YEAST RuvB-like protein 2 (RUVBL2) (TIP49b homolog) (TIP49-homology
protein 2)
Length = 471
Score = 164 bits (414), Expect = 1e-40
Identities = 78/146 (53%), Positives = 105/146 (71%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQRSPHGIPCDLLDRLLIISTVPYTKDEI 180
CFSF+NRALE + AP+++MATNRGV+ RGT +SPHG+P DLLDR +II+T Y + EI
Sbjct: 305 CFSFINRALEDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRSIIITTKSYNEQEI 364
Query: 181 NQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLK 360
IL IR +EE+VE S DAL LLT G+ETSLRY+ LI+ A + KRK V + D+K
Sbjct: 365 KTILSIRAQEEEVELSSDALDLLTKTGVETSLRYSSNLISVAQQIAMKRKNNTVEVEDVK 424
Query: 361 RVYTLFMDEKRSTQYLTEYQNEFMFD 438
R Y LF+D RS +Y+ E +++++ D
Sbjct: 425 RAYLLFLDSARSVKYVQENESQYIDD 450
>sp|Q9DE26|RUVB1_XENLA RuvB-like 1 (Pontin)
Length = 456
Score = 134 bits (337), Expect = 1e-31
Identities = 68/145 (46%), Positives = 98/145 (67%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDE 177
CF++L+RALES +AP+++ ATNRG IRGT+ SPHGIP DLLDR++II T+ YT E
Sbjct: 311 CFTYLHRALESSLAPIVIFATNRGNCIIRGTEDVASPHGIPLDLLDRVMIIRTMLYTPQE 370
Query: 178 INQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADL 357
+ QI+KIR + E + S++AL L IG +T+LRY++QL+T ANL+ + + +
Sbjct: 371 MKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHV 430
Query: 358 KRVYTLFMDEKRSTQYLTEYQNEFM 432
+ + LF D K S + L E Q +FM
Sbjct: 431 EEINELFYDAKSSAKILAEQQEKFM 455
>sp|Q03940|RUVB1_YEAST RuvB-like protein 1 (RUVBL1) (TIP49a homolog) (TIP49-homology
protein 1)
Length = 463
Score = 133 bits (334), Expect = 3e-31
Identities = 66/141 (46%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Frame = +1
Query: 4 FSFLNRALESDMAPVLVMATNRGVTNIRGTKQR-SPHGIPCDLLDRLLIISTVPYTKDEI 180
F++LN+ALES++APV+V+A+NRG+T +RGT+ SPHG+P DL+DRLLI+ T+PY KDEI
Sbjct: 321 FTYLNKALESNIAPVVVLASNRGMTTVRGTEDVISPHGVPPDLIDRLLIVRTLPYDKDEI 380
Query: 181 NQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADLK 360
I++ R E ++ AL LL ++G ETSLRYA+QL+ ++ + +E+ + D+
Sbjct: 381 RTIIERRATVERLQVESSALDLLATMGTETSLRYALQLLAPCGILAQTSNRKEIVVNDVN 440
Query: 361 RVYTLFMDEKRSTQYLTEYQN 423
LF+D KRST+ L N
Sbjct: 441 EAKLLFLDAKRSTKILETSAN 461
>sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(Nuclear matrix protein 238) (NMP 238) (54 kDa
erythrocyte cytosolic protein) (ECP-54)
(TIP60-associated protein 54-alpha) (TAP54-alpha)
Length = 456
Score = 130 bits (327), Expect = 2e-30
Identities = 65/145 (44%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDE 177
CF++L+RALES +AP+++ A+NRG IRGT+ SPHGIP DLLDR++II T+ YT E
Sbjct: 311 CFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQE 370
Query: 178 INQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADL 357
+ QI+KIR + E + S++AL L IG +T+LRY++QL+T ANL+ + + +
Sbjct: 371 MKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHV 430
Query: 358 KRVYTLFMDEKRSTQYLTEYQNEFM 432
+ + LF D K S + L + Q+++M
Sbjct: 431 EEISELFYDAKSSAKILADQQDKYM 455
>sp|P60123|RUVB1_RAT RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(DNA helicase p50)
sp|P60122|RUVB1_MOUSE RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein)
(49 kDa TBP-interacting protein) (TIP49a) (Pontin 52)
(DNA helicase p50)
Length = 456
Score = 130 bits (327), Expect = 2e-30
Identities = 65/145 (44%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDE 177
CF++L+RALES +AP+++ A+NRG IRGT+ SPHGIP DLLDR++II T+ YT E
Sbjct: 311 CFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQE 370
Query: 178 INQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADL 357
+ QI+KIR + E + S++AL L IG +T+LRY++QL+T ANL+ + + +
Sbjct: 371 MKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHV 430
Query: 358 KRVYTLFMDEKRSTQYLTEYQNEFM 432
+ + LF D K S + L + Q+++M
Sbjct: 431 EEISELFYDAKSSAKILADQQDKYM 455
>sp|Q8AWW7|RUVB1_BRARE RuvB-like 1 (Pontin) (zPontin)
Length = 456
Score = 130 bits (327), Expect = 2e-30
Identities = 68/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 CFSFLNRALESDMAPVLVMATNRGVTNIRGTKQ-RSPHGIPCDLLDRLLIISTVPYTKDE 177
CF++L+RALES +AP++V A+NRG IRGT+ SPHGIP DLLDR++II T+ YT E
Sbjct: 311 CFTYLHRALESSIAPIVVFASNRGNCLIRGTEDISSPHGIPLDLLDRVMIIRTMLYTPQE 370
Query: 178 INQILKIRCEEEDVEFSDDALTLLTSIGLETSLRYAIQLITTANLVCRKRKGQEVGIADL 357
+ QI+KIR + E + S++AL+ L IG +T+LRYA+QL+T A+L+ R + + V +
Sbjct: 371 MKQIIKIRAQTEGLNISEEALSHLGEIGTKTTLRYAVQLLTPASLLARVQGREVVEKEHV 430
Query: 358 KRVYTLFMDEKRSTQYLTEYQNEFM 432
+ + LF D K S + L + +FM
Sbjct: 431 EEINELFYDAKSSAKILQDQHTKFM 455
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,523,049
Number of Sequences: 369166
Number of extensions: 1026210
Number of successful extensions: 2300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2295
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)