DrC_00248
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00248 (926 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E mem... 404 e-112 sp|Q58129|Y719_METJA Hypothetical ABC transporter ATP-bindi... 268 2e-71 sp|Q73R11|CBIO1_TREDE Putative cobalt import ATP-binding pr... 83 1e-15 sp|Q972J5|CBIO_SULTO Putative cobalt import ATP-binding pro... 79 2e-14 sp|Q897I2|CBIO3_CLOTE Putative cobalt import ATP-binding pr... 78 4e-14 sp|Q737I0|CBIO4_BACC1 Putative cobalt import ATP-binding pr... 65 4e-10 sp|Q45978|HFAC_CAUCR Holdfast attachment protein C (Protein... 65 4e-10 sp|Q81CT8|CBIO3_BACCR Putative cobalt import ATP-binding pr... 64 6e-10 sp|Q734T1|CBIO3_BACC1 Putative cobalt import ATP-binding pr... 63 1e-09 sp|Q8K9M6|ZNUC_BUCAP High-affinity zinc uptake system ATP-b... 61 5e-09
>sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) (2'-5' oligoadenylate-binding protein) (HuHP68) sp|P61222|ABCE1_MOUSE ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) Length = 599 Score = 404 bits (1038), Expect = e-112 Identities = 202/308 (65%), Positives = 236/308 (76%) Frame = +1 Query: 1 VSDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEP 180 V IL KD + + LDLTHL R +LSGGELQRF A + KAD++ FDEP Sbjct: 184 VGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEP 243 Query: 181 SSYLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPF 360 SSYLDVKQRL+AA TIR L+ YI+ +EHDLSVLDYLSDFICCLYG P YGVVTMPF Sbjct: 244 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPF 303 Query: 361 SVREGINIFLDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLS 540 SVREGINIFLDGYVPTENLRFR+ +LVF+VAETA EEE+K+ + Y M K +G+F L+ Sbjct: 304 SVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELA 363 Query: 541 IESGKFTDSEIIVMLGENGTGKTTFINILAGRHEADGINKSPALNISYKPQTIKANIDKT 720 I +G+FTDSEI+VMLGENGTGKTTFI +LAGR + D + P LN+SYKPQ I + Sbjct: 364 IVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGS 423 Query: 721 VRNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVY 900 VR L EKIRDAY HPQF TDV+KPL+IE I D+E+ LSGGELQRVA+ LCLG+PADVY Sbjct: 424 VRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVY 483 Query: 901 LIDEPSAH 924 LIDEPSA+ Sbjct: 484 LIDEPSAY 491
Score = 80.9 bits (198), Expect = 5e-15
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +1
Query: 49 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 228
++K L + +++ ++ LSGGELQR +A C ADVY DEPS+YLD +QRL AA +
Sbjct: 445 VMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVV 504
Query: 229 -RDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFL 390
R +L +EHD + YL+D + G P V P ++ G+N FL
Sbjct: 505 KRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFL 559
Score = 51.6 bits (122), Expect = 3e-06
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Frame = +1
Query: 568 EIIVMLGENGTGKTTFINILAGRHEAD-GINKSPA------------------------- 669
E++ ++G NG GK+T + ILAG+ + + G P
Sbjct: 104 EVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDD 163
Query: 670 LNISYKPQTIKANIDKTVRNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGE 849
L KPQ + I K + + I D + Q V + L + +++R + LSGGE
Sbjct: 164 LKAIIKPQYVD-QIPKAAKG-TVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGE 221
Query: 850 LQRVAITLCLGRPADVYLIDEPSAH 924
LQR A + + AD+++ DEPS++
Sbjct: 222 LQRFACAVVCIQKADIFMFDEPSSY 246
>sp|Q58129|Y719_METJA Hypothetical ABC transporter ATP-binding protein MJ0719 Length = 600 Score = 268 bits (684), Expect = 2e-71 Identities = 142/311 (45%), Positives = 202/311 (64%), Gaps = 4/311 (1%) Frame = +1 Query: 1 VSDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEP 180 V D+LK D KG + +++ L+L +++ R+ +LSGGELQR IA + D+YFFDEP Sbjct: 191 VGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEP 250 Query: 181 SSYLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPF 360 SS+LD++QR AA IR+L N +V +EHDL VLDYLSD+I +YG P YG+V+MP Sbjct: 251 SSWLDIRQRFNAARLIREL----NKVVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPK 306 Query: 361 SVREGINIFLDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLS 540 SVR GIN +L G + EN+RFR+ ++F + A+ + R +Y M KTLGDF L Sbjct: 307 SVRVGINEYLYGELREENIRFRKEPIIFE--KRAVIDFKNRPILLSYSSMKKTLGDFKLE 364 Query: 541 IESGKFTDSEIIVMLGENGTGKTTFINILAG--RHEADGINKSPALNISYKPQTIKANID 714 + G E+I +LG NG GKTTF+ +LAG + + + K + +SYKPQ I + D Sbjct: 365 VSGGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPDEGEVIKEGDIKVSYKPQYITPDYD 424 Query: 715 KTVRNFL--LEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRP 888 TV + L + I +Y ++++++ PL++E++ DRE+ LSGGELQRVAI CL R Sbjct: 425 GTVEDLLSSITNIHTSY----YKSEIINPLQLEKLLDREVRELSGGELQRVAIAACLSRD 480 Query: 889 ADVYLIDEPSA 921 AD+YL+DEPSA Sbjct: 481 ADIYLLDEPSA 491
Score = 96.3 bits (238), Expect = 1e-19
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Frame = +1
Query: 49 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 228
I+ L L L+ R+ ELSGGELQR IA C AD+Y DEPS++LDV+QRL+ + I
Sbjct: 446 IINPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVSKVI 505
Query: 229 RDLLTETNY-IVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFL 390
R + E + ++HD+ DY+SD G PG +GV + P + R+G N FL
Sbjct: 506 RRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFGVGSSPMNKRDGANKFL 560
>sp|Q73R11|CBIO1_TREDE Putative cobalt import ATP-binding protein cbiO 1 Length = 489 Score = 83.2 bits (204), Expect = 1e-15 Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 22/316 (6%) Frame = +1 Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219 LE + +DL + +L R ELSGGE Q+ A A D++ DEPSS +D + + Sbjct: 122 LEKVTEDLQIQNLRERSIFELSGGEKQKIAFASVYAAAPDIFVLDEPSSNMDYHSIKELS 181 Query: 220 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFLDGY 399 I+ + + I+ EH + L ++D + + G + ++ +++ + Sbjct: 182 ELIKKIKLQGKTIIIAEHRIWYLMDIADRVIFMEN-----GKIAHDMDIKTFVDL-PEAQ 235 Query: 400 VPTENLRFRETALVFRVAETA-MEEEIKRS---RQFNYKEMTKTLGDFHLSI---ESGKF 558 + + LR R A V AET + ++ S F K++T LG H S+ S Sbjct: 236 IKSMKLRCRNLADV--KAETVNVSPDVSVSFGGHTFAVKDITVKLG--HTSVLQDISFST 291 Query: 559 TDSEIIVMLGENGTGKTTFINILAGRHEADGINKSPALNISYKPQTIKANIDKTVRNFLL 738 T EII + GENG GKTT L G+ + A +IS+ + + + ++ Sbjct: 292 TGGEIIAITGENGAGKTTLARTLC------GLTQEAAGSISFDGNPLSRKMRRERSYMVM 345 Query: 739 EKIRDAYIHPQFQT---------------DVLKPLRIEEIQDREINHLSGGELQRVAITL 873 + + +VL L + +++R LSGG+ QR+A+ + Sbjct: 346 QDVGHQLFTDSVYAECRLGIKDLPDPAIDEVLTELSLNRLKERHPLSLSGGQKQRLAVAV 405 Query: 874 CLGRPADVYLIDEPSA 921 + D+ + DEP++ Sbjct: 406 SVLCGKDILIFDEPTS 421
Score = 57.8 bits (138), Expect = 4e-08
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = +1
Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219
++ +L +L L L R LSGG+ QR +A + D+ FDEP+S LD+K +A
Sbjct: 373 IDEVLTELSLNRLKERHPLSLSGGQKQRLAVAVSVLCGKDILIFDEPTSGLDLKSMQEAG 432
Query: 220 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYG 324
I+ L + ++ I HD+ + + + L G
Sbjct: 433 RIIKRLADDKKTVIVITHDIEFIKTICSRVLILSG 467
Score = 42.0 bits (97), Expect = 0.002
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Frame = +1
Query: 481 RSRQFNYKEMTKT-LGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAG-------- 633
R+ F+Y + L D L I G + +++ G +G GKTT ++ G
Sbjct: 5 RNISFSYNGTKENNLCDISLHIPKG-----QCVLLCGASGCGKTTLTRLINGLIPHFFEG 59
Query: 634 ------------RHEADGINKSPALNISYK-PQTIKANIDKTVRNFLLEKIRDAYIHPQF 774
EAD S ++ ++ P+T N D ++ + + + P+
Sbjct: 60 EFSGEAIINGMNSEEADIAQLSDSVGTVFQNPRTQFFNTDTDSE--IVFGLENRGLPPEQ 117
Query: 775 QTD----VLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 924
V + L+I+ +++R I LSGGE Q++A D++++DEPS++
Sbjct: 118 LLSRLEKVTEDLQIQNLRERSIFELSGGEKQKIAFASVYAAAPDIFVLDEPSSN 171
>sp|Q972J5|CBIO_SULTO Putative cobalt import ATP-binding protein cbiO Length = 471 Score = 78.6 bits (192), Expect = 2e-14 Identities = 80/312 (25%), Positives = 140/312 (44%), Gaps = 19/312 (6%) Frame = +1 Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219 + + + + ++HL+ ++ LSGGE QR + + DEP+S +D+K + Sbjct: 123 INKVSQIVGISHLLNKETFRLSGGEKQRVVLGSILIMNPKALILDEPTSSIDLKGTKEIL 182 Query: 220 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFLDGY 399 TT+R L + + I+A EH ++ + D I L +Y + + ++ L+ Sbjct: 183 TTLRGLKEKMSMIIA-EHKINKVLEFVDRIIILDKGKIIYDIKRDHVKEVDFEDLGLEPL 241 Query: 400 VPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLSIESGKFTDSEIIV 579 P+ + R R E +E ++K + +T+ D + + G I Sbjct: 242 RPSPLPKKR------RDGEVILEAKVK------VTDGNRTIVDTEIVLRKG------ISA 283 Query: 580 MLGENGTGKTTFINILAG------------RHEADGINKSPALN----ISYKPQTIKANI 711 ++G+NG+GK+T + LAG + E I+K P I+Y PQ I Sbjct: 284 LIGDNGSGKSTLLKALAGILPINLKFYGSIKVEGKEISKLPVEKRGEIIAYLPQEIDLMF 343 Query: 712 -DKTVRNFLLEKIRDAYIHPQFQTDVLKPL--RIEEIQDREINHLSGGELQRVAITLCLG 882 KTV+ E A + ++ V+K L R +DR+ LS G+ +RVAI+ L Sbjct: 344 TKKTVKE---EVSYPAKVRKKYDERVIKELLKRFNLPEDRDPFLLSVGQKRRVAISSLLA 400 Query: 883 RPADVYLIDEPS 918 V+L+DEP+ Sbjct: 401 TGVKVFLLDEPT 412
>sp|Q897I2|CBIO3_CLOTE Putative cobalt import ATP-binding protein cbiO 3 Length = 437 Score = 77.8 bits (190), Expect = 4e-14 Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 56/349 (16%) Frame = +1 Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219 + ++ L L + ++ E+SGGE QR IA + FDEP S LD + Sbjct: 23 VSEVISLLGLNKIRDKQTTEISGGEKQRVAIASVVSMDPQIIAFDEPISQLDPISAEEVL 82 Query: 220 TTIRDLLTETNY-IVAIEHDLSVLDYLSDFICCL---------------------YGAPG 333 +I+ L + I+ +E L +++D I + Y P Sbjct: 83 NSIKRLNRDLGKTIILVEQRLDKCFHMADRIIFMENGEIIGQGTPKNIPENIVNKYHLPT 142 Query: 334 LY------GVVTMPFSVREGINIFLDGY---VPTENLRFRETALVFRVAETAMEEEIKRS 486 + G+ T+P +V+EG +I + + ++L+F+E + EI++ Sbjct: 143 ITYIFKEAGLQTLPITVKEGRDIIRNNKFQDLKEDDLKFKEVVM-----------EIEKL 191 Query: 487 RQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAGRHEA------- 645 F Y+ K L D + G EI+ ++GENG GK+T I+AG + Sbjct: 192 N-FEYERGYKILKDLSFKLHRG-----EIMTVMGENGAGKSTLFKIIAGMIDKYKGKVLI 245 Query: 646 DGIN------KSPALNISYKPQ---------TIKANIDKTVRN---FLLEKIRDAYIHPQ 771 D N K I Y Q T+ + T++N + EK+ Sbjct: 246 DNKNIKSLKLKERIKKIGYLSQNPNDYFGRKTVFEEVGYTLKNIGEYKEEKVEQ------ 299 Query: 772 FQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPS 918 V+K L I ++D+ LSGGE QRVAI + ++ ++DEP+ Sbjct: 300 ----VMKLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEPT 344
Score = 52.0 bits (123), Expect = 2e-06
Identities = 30/102 (29%), Positives = 54/102 (52%)
Frame = +1
Query: 1 VSDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEP 180
+ +I ++K+ K +E ++K L++++L + +LSGGE QR IAC + ++ DEP
Sbjct: 286 LKNIGEYKEEK--VEQVMKLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEP 343
Query: 181 SSYLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDF 306
+ +D + + I+ L IV I HD D+ D+
Sbjct: 344 TRGMDAEAKENLGEIIKTLAEVGKSIVVITHD---SDFAGDY 382
>sp|Q737I0|CBIO4_BACC1 Putative cobalt import ATP-binding protein cbiO 4 Length = 566 Score = 64.7 bits (156), Expect = 4e-10 Identities = 87/359 (24%), Positives = 146/359 (40%), Gaps = 53/359 (14%) Frame = +1 Query: 4 SDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPS 183 ++ + D K I+ LK + + + + ELSGG+ Q +A A + FDEP Sbjct: 113 NECVNEDDMKKIVSESLKKVKMHNFHKQSPHELSGGQKQTVSLAGLLTTNAHILLFDEPL 172 Query: 184 SYLDVKQRLQAATTIRDLLTETN-YIVAIEH--------DLSVLDYLSDFICCLYGAPG- 333 + LD L I+D+ + N IV IEH DL + + + G P Sbjct: 173 ANLDPVSSLHTVELIKDIHKQYNKTIVIIEHRIEEMLNLDLDKIILIDEGEIVAIGTPEK 232 Query: 334 -LYGVVTMPFSVREGINI----------FLDGYVPTENLRFRETALVFR--------VAE 456 L + +RE + I D P ENL+ + V + Sbjct: 233 ILASNILPSIGLREPMYIEGLKRLHFDSNNDVIYPLENLQRESVSGVINEWMEKQTFCKD 292 Query: 457 TAMEEEIKR--SRQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILA 630 T ++E+ + + F+Y K L + + S+ G EI+ +LG NG GK+T + L Sbjct: 293 TPTKKELLKVENLSFSYPNKQKVLDNVNFSLFKG-----EIVALLGHNGAGKSTLAHSLI 347 Query: 631 GRHEA-------DGIN------KSPALNISYKPQTIKANIDKTVRNFLLEKIRDAYIHPQ 771 G ++ DG+N + ISY Q I + ++E+I + + Sbjct: 348 GINKTKNDRILIDGVNINSWSIRKRGEVISYVMQNPNHMITQAT---VMEEISFSLKLKK 404 Query: 772 FQTDVLKPLRIEE---------IQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSA 921 F + +K +R EE ++ I LS G+ +R+ I L + ++DEP+A Sbjct: 405 FSKEEIK-VRAEETLKICDLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTA 462
Score = 32.3 bits (72), Expect = 1.9
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 43 ESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAAT 222
E LK DL LS G+ +R IA + DEP++ D Q T
Sbjct: 415 EETLKICDLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYYHYKQFMT 474
Query: 223 TIRDLLTETNYIVAIEHDLSV-LDY 294
IR L + + I HD+++ L+Y
Sbjct: 475 FIRKLAAKGLSFIFITHDMNLALEY 499
Score = 30.8 bits (68), Expect = 5.6
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Frame = +1
Query: 493 FNYKEMTK-TLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAGR--HEADGINKS 663
F YK + T+ D I G E +++ G +G+GK+T + + G +G +
Sbjct: 12 FQYKHAAQPTVKDVTFHIYPG-----EKVLIAGRSGSGKSTLAHCMNGLIPFSYEGTSTG 66
Query: 664 PALNISYKP---------------------QTIKANIDKTVRNFLLEKIRDAYIHPQFQT 780
L P Q I +++ V +L + + + +
Sbjct: 67 TILIDGKDPRKGSIFEQSKQVGTILQDQDAQFIGLTVEEDVAFYLENECVNEDDMKKIVS 126
Query: 781 DVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 924
+ LK +++ + + LSGG+ Q V++ L A + L DEP A+
Sbjct: 127 ESLKKVKMHNFHKQSPHELSGGQKQTVSLAGLLTTNAHILLFDEPLAN 174
>sp|Q45978|HFAC_CAUCR Holdfast attachment protein C (Protein hfaC) Length = 608 Score = 64.7 bits (156), Expect = 4e-10 Identities = 79/320 (24%), Positives = 126/320 (39%), Gaps = 47/320 (14%) Frame = +1 Query: 100 LSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTIRDLLTETNYIVAI-EHD 276 LSGGE +R +A + DV DEP+++LD+ A T+ D L + I HD Sbjct: 121 LSGGETRRAALARAFAEQPDVLLLDEPTNHLDIF----AIQTLEDELAASKCAALIVSHD 176 Query: 277 LSVLDYLSDFICCL-----------YGAPGLYGVVTMPFSVREGINIFLDGYVPTENLRF 423 + L+ +++ L + + M E LD + EN Sbjct: 177 RAFLNRVTERCFWLEHRKIRRLDKGFSEFEAWAESIMAADAEEARR--LDKVLERENAWL 234 Query: 424 --------------RETALVFRVAETAMEEEIKRS-------------RQFNYKEMTKTL 522 R L R + + E++ + R K +TK Sbjct: 235 ARGVQGRRARNEGRRRALLALRAEKKDRQSELRGTMTMAVESAGTSGKRVVEAKGVTKRF 294 Query: 523 GDFHLSIE-SGKFTDSEIIVMLGENGTGKTTFINILAGRHEADG--INKSPALNISYKPQ 693 G+ + S + + + ++G NG GKTT + +L G E D + L +SY Q Sbjct: 295 GERTIVENFSTRILRGDRVALVGPNGAGKTTLVKLLLGELERDAGTVQLGTNLEVSYIDQ 354 Query: 694 TIKANIDK-TVRNFLLEKIRDAYI---HPQFQTDVLKPLRIEEIQDRE-INHLSGGELQR 858 A DK TV +FL D+ I HP+ K + Q R+ + LSGGE R Sbjct: 355 ARMALSDKITVWDFLTPGGGDSIIVRGHPKHVAGYAKEFLFTDAQLRQPVTSLSGGERNR 414 Query: 859 VAITLCLGRPADVYLIDEPS 918 + + L P ++ ++DEP+ Sbjct: 415 LLLARALANPTNLMVLDEPT 434
Score = 44.3 bits (103), Expect = 5e-04
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Frame = +1
Query: 580 MLGENGTGKTTFINILAGRH-EADGINKS--PALNISYKPQTIKANIDKTVRNFLLEKIR 750
++G NG GK+T + ILAG+ EAD ++ P + Y Q + + + +
Sbjct: 40 LVGRNGAGKSTLLKILAGQGVEADSGERAVQPGAKVVYVSQEPEITGETLLDYATAGGAQ 99
Query: 751 DAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 924
D L P D+ LSGGE +R A+ DV L+DEP+ H
Sbjct: 100 DYEAQAALADFGLDP-------DKSAKGLSGGETRRAALARAFAEQPDVLLLDEPTNH 150
Score = 33.9 bits (76), Expect = 0.67
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 100 LSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTIRDLLTE-TNYIVAIEHD 276
LSGGE R +A ++ DEP++ LD + + DLL + ++ + HD
Sbjct: 407 LSGGERNRLLLARALANPTNLMVLDEPTNDLD----MDTLDLLEDLLADFDGTLILVSHD 462
Query: 277 LSVLDYLSDFICCLYGAPGL 336
+D L+ L G G+
Sbjct: 463 RDFIDRLASSTIALDGKGGV 482
>sp|Q81CT8|CBIO3_BACCR Putative cobalt import ATP-binding protein cbiO 3 Length = 566 Score = 63.9 bits (154), Expect = 6e-10 Identities = 85/367 (23%), Positives = 142/367 (38%), Gaps = 61/367 (16%) Frame = +1 Query: 4 SDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPS 183 ++ +K + K I+ L+ + + + ELSGG+ Q +A AD+ FDEP Sbjct: 113 NECVKQDNMKKIVSDSLRKVKMHTFHKQSPHELSGGQKQTVSLAGLLTTNADILLFDEPL 172 Query: 184 SYLDVKQRLQAATTIRDLLTETN-YIVAIEH--------DLSVLDYLSDFICCLYGAPG- 333 + LD + ++D+ + N IV IEH DL + + + G P Sbjct: 173 ANLDPLSAIHTIELMKDIHEQYNKTIVIIEHRIEEIFKLDLDKVILIDEGKVIAMGTPKE 232 Query: 334 -LYGVVTMPFSVREGINIFL----------DGYVPTENLRFRETALVFR--------VAE 456 L + +RE I I D P ENL+ + + V + + Sbjct: 233 ILASNILPRIGLREPIYIEALKRLHFDSNNDVIYPMENLQKEKVSNVIKEWMEKQVILKR 292 Query: 457 TAMEEEIKR--SRQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILA 630 A +E+ + + F+Y K L + +L I G EI+ +LG NG GK+T Sbjct: 293 NAKNKELLKVENLSFSYPNKQKVLENVNLLIYEG-----EIVALLGHNGAGKSTL----- 342 Query: 631 GRHEADGINKSPALNISYKPQTI------------------------------KANIDKT 720 H GINK I+ K + I + + T Sbjct: 343 -AHSLIGINKMKNGKIALKGEDISSWSIRKRGEIISYVMQNPNHMITQPTVFEEVSFTLT 401 Query: 721 VRNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVY 900 + NF E+I++ +LK + ++ I LS G+ +R+ I L + Sbjct: 402 LHNFSKEEIKNKV------EGILKICGLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLI 455 Query: 901 LIDEPSA 921 ++DEP+A Sbjct: 456 ILDEPTA 462
Score = 34.3 bits (77), Expect = 0.51
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Frame = +1
Query: 517 TLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFIN------------------ILAGRHE 642
TL D I G E +++ G +G+GK+T + ++AG+
Sbjct: 21 TLSDITFHIYPG-----EKVLIAGRSGSGKSTLAHCINGLIPFSYEGNSTGNVLIAGKDP 75
Query: 643 ADGINKSPALNIS-----YKPQTIKANIDKTVRNFLLEKIRDAYIHPQFQTDVLKPLRIE 807
+G + + Q I +++ V +L + + +D L+ +++
Sbjct: 76 REGSIFEQSKQVGTILQDQDAQFIGLTVEEDVAFYLENECVKQDNMKKIVSDSLRKVKMH 135
Query: 808 EIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 924
+ + LSGG+ Q V++ L AD+ L DEP A+
Sbjct: 136 TFHKQSPHELSGGQKQTVSLAGLLTTNADILLFDEPLAN 174
Score = 32.3 bits (72), Expect = 1.9
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 22 KDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVK 201
++ K +E ILK L LS G+ +R IA + DEP++ D
Sbjct: 408 EEIKNKVEGILKICGLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYY 467
Query: 202 QRLQAATTIRDLLTETNYIVAIEHDLSV-LDY 294
Q + I++L + V I HD+++ L+Y
Sbjct: 468 HYKQFMSFIKNLAKKGISFVVITHDMNLALEY 499
>sp|Q734T1|CBIO3_BACC1 Putative cobalt import ATP-binding protein cbiO 3 Length = 553 Score = 63.2 bits (152), Expect = 1e-09 Identities = 84/341 (24%), Positives = 139/341 (40%), Gaps = 48/341 (14%) Frame = +1 Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLD---VKQRL 210 + ++ L L+ + LSGG+ Q +A V + + DEP++ LD K+ L Sbjct: 125 IAELISFLGFQDLLHQSVHTLSGGQKQLVNLAAVLVMQPKLLLLDEPTAQLDPIAAKEFL 184 Query: 211 QAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYG-----VVTMPFSVREG 375 I + L T IV EH L + L+ + C+ +Y V+ + V EG Sbjct: 185 GLLKRINEELGIT--IVLSEHRLDEVIPLATRVICMNNGRIVYDGSPKRVIANMWEV-EG 241 Query: 376 INIFLDGYVPTENLRFRETALVFRVAETAM------------EEEIKRSRQ--------- 492 F+ +P L + + F V E M E ++R +Q Sbjct: 242 FRPFIP-QIPRLFLEWNAKDIPFTVREAQMKMNDFSAISYVNEPIVQREKQEVILSAEHI 300 Query: 493 -FNY-KEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAGR---------- 636 F Y K L D +SIE GK+ + ++G+NGTGK+T + ILAG Sbjct: 301 SFQYEKNSPLILRDLTVSIEKGKW-----VALVGKNGTGKSTLLTILAGLQKARRGKVKW 355 Query: 637 -----HEADGINKSPALNISYKPQTIKANIDKTVRNFLLEKIRDAYIH--PQFQTDVLKP 795 H+ D + ++ + D TV + + E+ R+ Y + LK Sbjct: 356 NGKVIHKIDSKERFKSIGYVSQHPYYHFTFD-TVWDEVYERARELYGEQGKEIAEQQLKK 414 Query: 796 LRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPS 918 + +++R + SGGE Q +A+ L + L+DEP+ Sbjct: 415 FWLYALKERHPHDCSGGEQQLLALCTTLLSKPTLLLLDEPT 455
Score = 38.1 bits (87), Expect = 0.035
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +1
Query: 31 KGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRL 210
K I E LK L L R + SGGE Q + ++K + DEP+ LD ++
Sbjct: 405 KEIAEQQLKKFWLYALKERHPHDCSGGEQQLLALCTTLLSKPTLLLLDEPTKGLDPWKKE 464
Query: 211 QAATTIRDLLTETNYIVAIEHDL 279
+ R L E IV HD+
Sbjct: 465 RVGELFRKLQKEGTTIVMATHDI 487
>sp|Q8K9M6|ZNUC_BUCAP High-affinity zinc uptake system ATP-binding protein znuC Length = 238 Score = 60.8 bits (146), Expect = 5e-09 Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 4/132 (3%) Frame = +1 Query: 535 LSIESGKFTDSEIIVMLGENGTGKTTFINILAGRHEAD--GINKSPALNISYKPQTIKAN 708 LS S + II ++G NG GK+T I ++ G + + I +SP +++ Y PQ + N Sbjct: 20 LSNISFSLLSNRIITLIGPNGAGKSTLIRVILGLIQPNLGNIIRSPKISVGYVPQKLYFN 79 Query: 709 --IDKTVRNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLG 882 + TV F+ R I+ +LK ++ + +Q + +LSGGE+QR+ + L Sbjct: 80 NLLPITVEKFMKLSKRKKNINI---LKILKRVKAQSLQYSRLQNLSGGEMQRILLARALL 136 Query: 883 RPADVYLIDEPS 918 ++ ++DEP+ Sbjct: 137 NNPNLLVLDEPT 148
Score = 46.2 bits (108), Expect = 1e-04
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +1
Query: 16 KHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLD 195
K K IL+ ILK + L + LSGGE+QR +A + ++ DEP+ +D
Sbjct: 94 KRKKNINILK-ILKRVKAQSLQYSRLQNLSGGEMQRILLARALLNNPNLLVLDEPTQGVD 152
Query: 196 VKQRLQAATTIRDLLTETN-YIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVRE 372
V +L I + +E I+ + HDL+ + ++++ CL G F E
Sbjct: 153 VMGQLDLYELINQIRSEMQCSILIVSHDLNFVMAKTNYVICLNKHICCSGTPQTVFKNLE 212
Query: 373 GINIF 387
I+IF
Sbjct: 213 FISIF 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,070,043
Number of Sequences: 369166
Number of extensions: 2086219
Number of successful extensions: 10505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10126
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
