Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_P12
(839 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E mem... 342 8e-94
sp|Q58129|Y719_METJA Hypothetical ABC transporter ATP-bindi... 212 1e-54
sp|Q73R11|CBIO1_TREDE Putative cobalt import ATP-binding pr... 70 7e-12
sp|Q972J5|CBIO_SULTO Putative cobalt import ATP-binding pro... 60 6e-09
sp|Q897I2|CBIO3_CLOTE Putative cobalt import ATP-binding pr... 60 6e-09
sp|Q81CT8|CBIO3_BACCR Putative cobalt import ATP-binding pr... 60 1e-08
sp|Q01937|LACK_AGRRD Lactose transport ATP-binding protein ... 59 2e-08
sp|Q737I0|CBIO4_BACC1 Putative cobalt import ATP-binding pr... 58 3e-08
sp|Q8XNI5|UVRA_CLOPE UvrABC system protein A (UvrA protein)... 57 6e-08
sp|Q8Y651|MNTB_LISMO Manganese transport system ATP-binding... 57 8e-08
>sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 (RNase L inhibitor)
(Ribonuclease 4 inhibitor) (RNS4I) (2'-5'
oligoadenylate-binding protein) (HuHP68)
sp|P61222|ABCE1_MOUSE ATP-binding cassette sub-family E member 1 (RNase L inhibitor)
(Ribonuclease 4 inhibitor) (RNS4I)
Length = 599
Score = 342 bits (877), Expect = 8e-94
Identities = 171/267 (64%), Positives = 200/267 (74%)
Frame = +1
Query: 1 VSDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEP 180
V IL KD + + LDLTHL R +LSGGELQRF A + KAD++ FDEP
Sbjct: 184 VGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEP 243
Query: 181 SSYLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPF 360
SSYLDVKQRL+AA TIR L+ YI+ +EHDLSVLDYLSDFICCLYG P YGVVTMPF
Sbjct: 244 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPF 303
Query: 361 SVREGINIFLDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLS 540
SVREGINIFLDGYVPTENLRFR+ +LVF+VAETA EEE+K+ + Y M K +G+F L+
Sbjct: 304 SVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELA 363
Query: 541 IESGKFTDSEIIVMLGENGTGKTTFINILAGRHEADGINKSPALNISYKPQTIKANIDKT 720
I +G+FTDSEI+VMLGENGTGKTTFI +LAGR + D + P LN+SYKPQ I +
Sbjct: 364 IVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGS 423
Query: 721 VRNFLLEKIRDAYIHPQFQTDVLKPLR 801
VR L EKIRDAY HPQF TDV+KPL+
Sbjct: 424 VRQLLHEKIRDAYTHPQFVTDVMKPLQ 450
Score = 80.9 bits (198), Expect = 4e-15
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +1
Query: 49 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 228
++K L + +++ ++ LSGGELQR +A C ADVY DEPS+YLD +QRL AA +
Sbjct: 445 VMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVV 504
Query: 229 -RDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFL 390
R +L +EHD + YL+D + G P V P ++ G+N FL
Sbjct: 505 KRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFL 559
>sp|Q58129|Y719_METJA Hypothetical ABC transporter ATP-binding protein MJ0719
Length = 600
Score = 212 bits (539), Expect = 1e-54
Identities = 115/274 (41%), Positives = 171/274 (62%), Gaps = 4/274 (1%)
Frame = +1
Query: 1 VSDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEP 180
V D+LK D KG + +++ L+L +++ R+ +LSGGELQR IA + D+YFFDEP
Sbjct: 191 VGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEP 250
Query: 181 SSYLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPF 360
SS+LD++QR AA IR+L N +V +EHDL VLDYLSD+I +YG P YG+V+MP
Sbjct: 251 SSWLDIRQRFNAARLIREL----NKVVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPK 306
Query: 361 SVREGINIFLDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLS 540
SVR GIN +L G + EN+RFR+ ++F + A+ + R +Y M KTLGDF L
Sbjct: 307 SVRVGINEYLYGELREENIRFRKEPIIFE--KRAVIDFKNRPILLSYSSMKKTLGDFKLE 364
Query: 541 IESGKFTDSEIIVMLGENGTGKTTFINILAG--RHEADGINKSPALNISYKPQTIKANID 714
+ G E+I +LG NG GKTTF+ +LAG + + + K + +SYKPQ I + D
Sbjct: 365 VSGGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPDEGEVIKEGDIKVSYKPQYITPDYD 424
Query: 715 KTVRNFL--LEKIRDAYIHPQFQTDVLKPLRSKR 810
TV + L + I +Y ++++++ PL+ ++
Sbjct: 425 GTVEDLLSSITNIHTSY----YKSEIINPLQLEK 454
Score = 96.3 bits (238), Expect = 9e-20
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Frame = +1
Query: 49 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 228
I+ L L L+ R+ ELSGGELQR IA C AD+Y DEPS++LDV+QRL+ + I
Sbjct: 446 IINPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVSKVI 505
Query: 229 RDLLTETNY-IVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFL 390
R + E + ++HD+ DY+SD G PG +GV + P + R+G N FL
Sbjct: 506 RRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFGVGSSPMNKRDGANKFL 560
>sp|Q73R11|CBIO1_TREDE Putative cobalt import ATP-binding protein cbiO 1
Length = 489
Score = 70.1 bits (170), Expect = 7e-12
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 7/205 (3%)
Frame = +1
Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219
LE + +DL + +L R ELSGGE Q+ A A D++ DEPSS +D + +
Sbjct: 122 LEKVTEDLQIQNLRERSIFELSGGEKQKIAFASVYAAAPDIFVLDEPSSNMDYHSIKELS 181
Query: 220 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFLDGY 399
I+ + + I+ EH + L ++D + + G + ++ +++ +
Sbjct: 182 ELIKKIKLQGKTIIIAEHRIWYLMDIADRVIFMEN-----GKIAHDMDIKTFVDL-PEAQ 235
Query: 400 VPTENLRFRETALVFRVAETA-MEEEIKRS---RQFNYKEMTKTLGDFHLSI---ESGKF 558
+ + LR R A V AET + ++ S F K++T LG H S+ S
Sbjct: 236 IKSMKLRCRNLADV--KAETVNVSPDVSVSFGGHTFAVKDITVKLG--HTSVLQDISFST 291
Query: 559 TDSEIIVMLGENGTGKTTFINILAG 633
T EII + GENG GKTT L G
Sbjct: 292 TGGEIIAITGENGAGKTTLARTLCG 316
Score = 57.8 bits (138), Expect = 4e-08
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = +1
Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219
++ +L +L L L R LSGG+ QR +A + D+ FDEP+S LD+K +A
Sbjct: 373 IDEVLTELSLNRLKERHPLSLSGGQKQRLAVAVSVLCGKDILIFDEPTSGLDLKSMQEAG 432
Query: 220 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYG 324
I+ L + ++ I HD+ + + + L G
Sbjct: 433 RIIKRLADDKKTVIVITHDIEFIKTICSRVLILSG 467
>sp|Q972J5|CBIO_SULTO Putative cobalt import ATP-binding protein cbiO
Length = 471
Score = 60.5 bits (145), Expect = 6e-09
Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 17/277 (6%)
Frame = +1
Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219
+ + + + ++HL+ ++ LSGGE QR + + DEP+S +D+K +
Sbjct: 123 INKVSQIVGISHLLNKETFRLSGGEKQRVVLGSILIMNPKALILDEPTSSIDLKGTKEIL 182
Query: 220 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFLDGY 399
TT+R L + + I+A EH ++ + D I L +Y + + ++ L+
Sbjct: 183 TTLRGLKEKMSMIIA-EHKINKVLEFVDRIIILDKGKIIYDIKRDHVKEVDFEDLGLEPL 241
Query: 400 VPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLSIESGKFTDSEIIV 579
P+ + R R E +E ++K + +T+ D + + G I
Sbjct: 242 RPSPLPKKR------RDGEVILEAKVK------VTDGNRTIVDTEIVLRKG------ISA 283
Query: 580 MLGENGTGKTTFINILAG------------RHEADGINKSPALN----ISYKPQTIKANI 711
++G+NG+GK+T + LAG + E I+K P I+Y PQ I
Sbjct: 284 LIGDNGSGKSTLLKALAGILPINLKFYGSIKVEGKEISKLPVEKRGEIIAYLPQEIDLMF 343
Query: 712 -DKTVRNFLLEKIRDAYIHPQFQTDVLKPLRSKRFKI 819
KTV+ E A + ++ V+K L KRF +
Sbjct: 344 TKKTVKE---EVSYPAKVRKKYDERVIKEL-LKRFNL 376
>sp|Q897I2|CBIO3_CLOTE Putative cobalt import ATP-binding protein cbiO 3
Length = 437
Score = 60.5 bits (145), Expect = 6e-09
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 31/229 (13%)
Frame = +1
Query: 40 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 219
+ ++ L L + ++ E+SGGE QR IA + FDEP S LD +
Sbjct: 23 VSEVISLLGLNKIRDKQTTEISGGEKQRVAIASVVSMDPQIIAFDEPISQLDPISAEEVL 82
Query: 220 TTIRDLLTET-NYIVAIEHDLSVLDYLSDFICCL---------------------YGAPG 333
+I+ L + I+ +E L +++D I + Y P
Sbjct: 83 NSIKRLNRDLGKTIILVEQRLDKCFHMADRIIFMENGEIIGQGTPKNIPENIVNKYHLPT 142
Query: 334 L------YGVVTMPFSVREGINIFLDGY---VPTENLRFRETALVFRVAETAMEEEIKRS 486
+ G+ T+P +V+EG +I + + ++L+F+E + EI++
Sbjct: 143 ITYIFKEAGLQTLPITVKEGRDIIRNNKFQDLKEDDLKFKEVVM-----------EIEK- 190
Query: 487 RQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAG 633
F Y+ K L D + G EI+ ++GENG GK+T I+AG
Sbjct: 191 LNFEYERGYKILKDLSFKLHRG-----EIMTVMGENGAGKSTLFKIIAG 234
Score = 52.0 bits (123), Expect = 2e-06
Identities = 30/102 (29%), Positives = 54/102 (52%)
Frame = +1
Query: 1 VSDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEP 180
+ +I ++K+ K +E ++K L++++L + +LSGGE QR IAC + ++ DEP
Sbjct: 286 LKNIGEYKEEK--VEQVMKLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEP 343
Query: 181 SSYLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDF 306
+ +D + + I+ L IV I HD D+ D+
Sbjct: 344 TRGMDAEAKENLGEIIKTLAEVGKSIVVITHD---SDFAGDY 382
>sp|Q81CT8|CBIO3_BACCR Putative cobalt import ATP-binding protein cbiO 3
Length = 566
Score = 59.7 bits (143), Expect = 1e-08
Identities = 67/265 (25%), Positives = 108/265 (40%), Gaps = 31/265 (11%)
Frame = +1
Query: 4 SDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPS 183
++ +K + K I+ L+ + + + ELSGG+ Q +A AD+ FDEP
Sbjct: 113 NECVKQDNMKKIVSDSLRKVKMHTFHKQSPHELSGGQKQTVSLAGLLTTNADILLFDEPL 172
Query: 184 SYLDVKQRLQAATTIRDLLTETN-YIVAIEH--------DLSVLDYLSDFICCLYGAPG- 333
+ LD + ++D+ + N IV IEH DL + + + G P
Sbjct: 173 ANLDPLSAIHTIELMKDIHEQYNKTIVIIEHRIEEIFKLDLDKVILIDEGKVIAMGTPKE 232
Query: 334 -LYGVVTMPFSVREGINIFL----------DGYVPTENLRFRETALVFR--------VAE 456
L + +RE I I D P ENL+ + + V + +
Sbjct: 233 ILASNILPRIGLREPIYIEALKRLHFDSNNDVIYPMENLQKEKVSNVIKEWMEKQVILKR 292
Query: 457 TAMEEEIKR--SRQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILA 630
A +E+ + + F+Y K L + +L I G EI+ +LG NG GK+T
Sbjct: 293 NAKNKELLKVENLSFSYPNKQKVLENVNLLIYEG-----EIVALLGHNGAGKSTL----- 342
Query: 631 GRHEADGINKSPALNISYKPQTIKA 705
H GINK I+ K + I +
Sbjct: 343 -AHSLIGINKMKNGKIALKGEDISS 366
Score = 32.3 bits (72), Expect = 1.7
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 22 KDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVK 201
++ K +E ILK L LS G+ +R IA + DEP++ D
Sbjct: 408 EEIKNKVEGILKICGLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYY 467
Query: 202 QRLQAATTIRDLLTETNYIVAIEHDLSV-LDY 294
Q + I++L + V I HD+++ L+Y
Sbjct: 468 HYKQFMSFIKNLAKKGISFVVITHDMNLALEY 499
>sp|Q01937|LACK_AGRRD Lactose transport ATP-binding protein lacK
Length = 363
Score = 58.5 bits (140), Expect = 2e-08
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Frame = +1
Query: 55 KDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTIRD 234
K L+L LM RK LSGG+ QR I V + DV+ FDEP S LD + R+ I
Sbjct: 119 KILELDALMDRKPKALSGGQRQRVAIGRAIVRQPDVFLFDEPLSNLDAELRVHMRVEIAR 178
Query: 235 LLTETN-YIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREG-INIFLDGYVPT 408
L E N IV + HD L+D I + G G+ V P ++ + N+F+ G++ +
Sbjct: 179 LHKELNATIVYVTHDQVEAMTLADKIVVMRG--GIVEQVGAPLALYDDPDNMFVAGFIGS 236
Query: 409 ENLRFRETALV 441
+ F ++
Sbjct: 237 PRMNFLPAVVI 247
>sp|Q737I0|CBIO4_BACC1 Putative cobalt import ATP-binding protein cbiO 4
Length = 566
Score = 58.2 bits (139), Expect = 3e-08
Identities = 64/256 (25%), Positives = 104/256 (40%), Gaps = 38/256 (14%)
Frame = +1
Query: 4 SDILKHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPS 183
++ + D K I+ LK + + + + ELSGG+ Q +A A + FDEP
Sbjct: 113 NECVNEDDMKKIVSESLKKVKMHNFHKQSPHELSGGQKQTVSLAGLLTTNAHILLFDEPL 172
Query: 184 SYLDVKQRLQAATTIRDLLTETN-YIVAIEH--------DLSVLDYLSDFICCLYGAPG- 333
+ LD L I+D+ + N IV IEH DL + + + G P
Sbjct: 173 ANLDPVSSLHTVELIKDIHKQYNKTIVIIEHRIEEMLNLDLDKIILIDEGEIVAIGTPEK 232
Query: 334 -LYGVVTMPFSVREGINI----------FLDGYVPTENLRFRETALVFR--------VAE 456
L + +RE + I D P ENL+ + V +
Sbjct: 233 ILASNILPSIGLREPMYIEGLKRLHFDSNNDVIYPLENLQRESVSGVINEWMEKQTFCKD 292
Query: 457 TAMEEEIKR--SRQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILA 630
T ++E+ + + F+Y K L + + S+ G EI+ +LG NG GK+T + L
Sbjct: 293 TPTKKELLKVENLSFSYPNKQKVLDNVNFSLFKG-----EIVALLGHNGAGKSTLAHSLI 347
Query: 631 GRHEA-------DGIN 657
G ++ DG+N
Sbjct: 348 GINKTKNDRILIDGVN 363
Score = 32.3 bits (72), Expect = 1.7
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 43 ESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAAT 222
E LK DL LS G+ +R IA + DEP++ D Q T
Sbjct: 415 EETLKICDLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYYHYKQFMT 474
Query: 223 TIRDLLTETNYIVAIEHDLSV-LDY 294
IR L + + I HD+++ L+Y
Sbjct: 475 FIRKLAAKGLSFIFITHDMNLALEY 499
>sp|Q8XNI5|UVRA_CLOPE UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
Length = 939
Score = 57.0 bits (136), Expect = 6e-08
Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 8/234 (3%)
Frame = +1
Query: 46 SILKDLDLTHL-MTRKCGELSGGELQRFCIACCAVAK--ADVYFFDEPSSYLDVKQRLQA 216
S L ++ L +L + RK G LSGGE QR +A ++ +Y DEPS L + +
Sbjct: 469 SFLINVGLDYLDLARKAGTLSGGEAQRIRLATQIGSQLMGVLYILDEPSIGLHQRDNDRL 528
Query: 217 ATTIRDLLTETNYIVAIEHDLSVL---DYLSDFICCLYGAPGLYGVVTMPFSVREGINIF 387
+T++ L N ++ +EHD + DY+ D PG + G I
Sbjct: 529 ISTLKQLRDVGNTLIVVEHDEDTMREADYIVDI------GPG---------AGEHGGKIV 573
Query: 388 LDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLG--DFHLSIESGKFT 561
G + + + E +L + A + E+ R+ G + +L + KF
Sbjct: 574 ASGTL--DEIMSNENSLTGKYLTGAKKVELPEERRKGNGNFITVKGAKENNLKNVTAKFP 631
Query: 562 DSEIIVMLGENGTGKTTFINILAGRHEADGINKSPALNISYKPQTIKANIDKTV 723
+ ++ G +G+GK+T +N + + +NK+ L +K T NIDK +
Sbjct: 632 LGTLTMVTGVSGSGKSTLVNEILYKGLNKIVNKAKDLPGKFKEITGYENIDKII 685
Score = 35.4 bits (80), Expect = 0.20
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Frame = +1
Query: 97 ELSGGELQRFCIACCAVAKAD---VYFFDEPSSYLDVKQRLQAATTIRDLLTETNYIVAI 267
+LSGGE QR +A ++ +Y DEP++ L + + ++ L+ N ++ I
Sbjct: 828 QLSGGEAQRIKLAYELSKRSTGKTLYILDEPTTGLHIHDVNRLVKILQRLVDGGNTVIVI 887
Query: 268 EHDLSVL---DYLSD 303
EH+L ++ DY+ D
Sbjct: 888 EHNLDMIKCADYIVD 902
>sp|Q8Y651|MNTB_LISMO Manganese transport system ATP-binding protein mntB
Length = 240
Score = 56.6 bits (135), Expect = 8e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +1
Query: 22 KDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVK 201
K K + L+ +++T M R+ GELSGG+LQR IA A+++F DEP + +D+
Sbjct: 108 KKEKQLALDALEQVEMTGFMKRQIGELSGGQLQRVFIARALAQHAEIFFLDEPFAGIDMT 167
Query: 202 QRLQAATTIRDLLTETNYIVAIEHDL-SVLDYLSDFI 309
++ L IV + HD V Y D I
Sbjct: 168 SEALIMRLLKKLRDNGKTIVVVHHDFHKVAAYFDDII 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,248,320
Number of Sequences: 369166
Number of extensions: 1802532
Number of successful extensions: 8594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8551
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)