Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L03
(920 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E mem... 403 e-112
sp|Q58129|Y719_METJA Hypothetical ABC transporter ATP-bindi... 265 2e-70
sp|Q73R11|CBIO1_TREDE Putative cobalt import ATP-binding pr... 83 9e-16
sp|Q972J5|CBIO_SULTO Putative cobalt import ATP-binding pro... 79 2e-14
sp|Q897I2|CBIO3_CLOTE Putative cobalt import ATP-binding pr... 78 4e-14
sp|Q45978|HFAC_CAUCR Holdfast attachment protein C (Protein... 65 3e-10
sp|Q737I0|CBIO4_BACC1 Putative cobalt import ATP-binding pr... 64 5e-10
sp|Q734T1|CBIO3_BACC1 Putative cobalt import ATP-binding pr... 63 1e-09
sp|Q81CT8|CBIO3_BACCR Putative cobalt import ATP-binding pr... 62 2e-09
sp|Q8K9M6|ZNUC_BUCAP High-affinity zinc uptake system ATP-b... 61 5e-09
>sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 (RNase L inhibitor)
(Ribonuclease 4 inhibitor) (RNS4I) (2'-5'
oligoadenylate-binding protein) (HuHP68)
sp|P61222|ABCE1_MOUSE ATP-binding cassette sub-family E member 1 (RNase L inhibitor)
(Ribonuclease 4 inhibitor) (RNS4I)
Length = 599
Score = 403 bits (1035), Expect = e-112
Identities = 201/305 (65%), Positives = 235/305 (77%)
Frame = +1
Query: 4 ILQHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSY 183
IL KD + + LDLTHL R +LSGGELQRF A + KAD++ FDEPSSY
Sbjct: 187 ILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSY 246
Query: 184 LDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVR 363
LDVKQRL+AA TIR L+ YI+ +EHDLSVLDYLSDFICCLYG P YGVVTMPFSVR
Sbjct: 247 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVR 306
Query: 364 EGINIFLDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLSIES 543
EGINIFLDGYVPTENLRFR+ +LVF+VAETA EEE+K+ + Y M K +G+F L+I +
Sbjct: 307 EGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVA 366
Query: 544 GKFTDSEIIVMLGENGTGKTTFINILAGRHEADGINKSPALNISYKPQTIKANIDKTVRN 723
G+FTDSEI+VMLGENGTGKTTFI +LAGR + D + P LN+SYKPQ I +VR
Sbjct: 367 GEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQ 426
Query: 724 FLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLID 903
L EKIRDAY HPQF TDV+KPL+IE I D+E+ LSGGELQRVA+ LCLG+PADVYLID
Sbjct: 427 LLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLID 486
Query: 904 EPSAH 918
EPSA+
Sbjct: 487 EPSAY 491
Score = 80.9 bits (198), Expect = 5e-15
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +1
Query: 43 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 222
++K L + +++ ++ LSGGELQR +A C ADVY DEPS+YLD +QRL AA +
Sbjct: 445 VMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVV 504
Query: 223 -RDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFL 384
R +L +EHD + YL+D + G P V P ++ G+N FL
Sbjct: 505 KRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFL 559
Score = 51.6 bits (122), Expect = 3e-06
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Frame = +1
Query: 562 EIIVMLGENGTGKTTFINILAGRHEAD-GINKSPA------------------------- 663
E++ ++G NG GK+T + ILAG+ + + G P
Sbjct: 104 EVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDD 163
Query: 664 LNISYKPQTIKANIDKTVRNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGE 843
L KPQ + I K + + I D + Q V + L + +++R + LSGGE
Sbjct: 164 LKAIIKPQYVD-QIPKAAKG-TVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGE 221
Query: 844 LQRVAITLCLGRPADVYLIDEPSAH 918
LQR A + + AD+++ DEPS++
Sbjct: 222 LQRFACAVVCIQKADIFMFDEPSSY 246
>sp|Q58129|Y719_METJA Hypothetical ABC transporter ATP-binding protein MJ0719
Length = 600
Score = 265 bits (676), Expect = 2e-70
Identities = 140/309 (45%), Positives = 201/309 (65%), Gaps = 4/309 (1%)
Frame = +1
Query: 1 DILQHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSS 180
D+L+ D KG + +++ L+L +++ R+ +LSGGELQR IA + D+YFFDEPSS
Sbjct: 193 DLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEPSS 252
Query: 181 YLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSV 360
+LD++QR AA IR+L N +V +EHDL VLDYLSD+I +YG P YG+V+MP SV
Sbjct: 253 WLDIRQRFNAARLIREL----NKVVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPKSV 308
Query: 361 REGINIFLDGYVPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLSIE 540
R GIN +L G + EN+RFR+ ++F + A+ + R +Y M KTLGDF L +
Sbjct: 309 RVGINEYLYGELREENIRFRKEPIIFE--KRAVIDFKNRPILLSYSSMKKTLGDFKLEVS 366
Query: 541 SGKFTDSEIIVMLGENGTGKTTFINILAG--RHEADGINKSPALNISYKPQTIKANIDKT 714
G E+I +LG NG GKTTF+ +LAG + + + K + +SYKPQ I + D T
Sbjct: 367 GGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPDEGEVIKEGDIKVSYKPQYITPDYDGT 426
Query: 715 VRNFL--LEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPAD 888
V + L + I +Y ++++++ PL++E++ DRE+ LSGGELQRVAI CL R AD
Sbjct: 427 VEDLLSSITNIHTSY----YKSEIINPLQLEKLLDREVRELSGGELQRVAIAACLSRDAD 482
Query: 889 VYLIDEPSA 915
+YL+DEPSA
Sbjct: 483 IYLLDEPSA 491
Score = 96.3 bits (238), Expect = 1e-19
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Frame = +1
Query: 43 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 222
I+ L L L+ R+ ELSGGELQR IA C AD+Y DEPS++LDV+QRL+ + I
Sbjct: 446 IINPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVSKVI 505
Query: 223 RDLLTETNY-IVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFL 384
R + E + ++HD+ DY+SD G PG +GV + P + R+G N FL
Sbjct: 506 RRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFGVGSSPMNKRDGANKFL 560
>sp|Q73R11|CBIO1_TREDE Putative cobalt import ATP-binding protein cbiO 1
Length = 489
Score = 83.2 bits (204), Expect = 9e-16
Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 22/316 (6%)
Frame = +1
Query: 34 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 213
LE + +DL + +L R ELSGGE Q+ A A D++ DEPSS +D + +
Sbjct: 122 LEKVTEDLQIQNLRERSIFELSGGEKQKIAFASVYAAAPDIFVLDEPSSNMDYHSIKELS 181
Query: 214 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFLDGY 393
I+ + + I+ EH + L ++D + + G + ++ +++ +
Sbjct: 182 ELIKKIKLQGKTIIIAEHRIWYLMDIADRVIFMEN-----GKIAHDMDIKTFVDL-PEAQ 235
Query: 394 VPTENLRFRETALVFRVAETA-MEEEIKRS---RQFNYKEMTKTLGDFHLSI---ESGKF 552
+ + LR R A V AET + ++ S F K++T LG H S+ S
Sbjct: 236 IKSMKLRCRNLADV--KAETVNVSPDVSVSFGGHTFAVKDITVKLG--HTSVLQDISFST 291
Query: 553 TDSEIIVMLGENGTGKTTFINILAGRHEADGINKSPALNISYKPQTIKANIDKTVRNFLL 732
T EII + GENG GKTT L G+ + A +IS+ + + + ++
Sbjct: 292 TGGEIIAITGENGAGKTTLARTLC------GLTQEAAGSISFDGNPLSRKMRRERSYMVM 345
Query: 733 EKIRDAYIHPQFQT---------------DVLKPLRIEEIQDREINHLSGGELQRVAITL 867
+ + +VL L + +++R LSGG+ QR+A+ +
Sbjct: 346 QDVGHQLFTDSVYAECRLGIKDLPDPAIDEVLTELSLNRLKERHPLSLSGGQKQRLAVAV 405
Query: 868 CLGRPADVYLIDEPSA 915
+ D+ + DEP++
Sbjct: 406 SVLCGKDILIFDEPTS 421
Score = 57.8 bits (138), Expect = 4e-08
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = +1
Query: 34 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 213
++ +L +L L L R LSGG+ QR +A + D+ FDEP+S LD+K +A
Sbjct: 373 IDEVLTELSLNRLKERHPLSLSGGQKQRLAVAVSVLCGKDILIFDEPTSGLDLKSMQEAG 432
Query: 214 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYG 318
I+ L + ++ I HD+ + + + L G
Sbjct: 433 RIIKRLADDKKTVIVITHDIEFIKTICSRVLILSG 467
Score = 42.0 bits (97), Expect = 0.002
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Frame = +1
Query: 475 RSRQFNYKEMTKT-LGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAG-------- 627
R+ F+Y + L D L I G + +++ G +G GKTT ++ G
Sbjct: 5 RNISFSYNGTKENNLCDISLHIPKG-----QCVLLCGASGCGKTTLTRLINGLIPHFFEG 59
Query: 628 ------------RHEADGINKSPALNISYK-PQTIKANIDKTVRNFLLEKIRDAYIHPQF 768
EAD S ++ ++ P+T N D ++ + + + P+
Sbjct: 60 EFSGEAIINGMNSEEADIAQLSDSVGTVFQNPRTQFFNTDTDSE--IVFGLENRGLPPEQ 117
Query: 769 QTD----VLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 918
V + L+I+ +++R I LSGGE Q++A D++++DEPS++
Sbjct: 118 LLSRLEKVTEDLQIQNLRERSIFELSGGEKQKIAFASVYAAAPDIFVLDEPSSN 171
>sp|Q972J5|CBIO_SULTO Putative cobalt import ATP-binding protein cbiO
Length = 471
Score = 78.6 bits (192), Expect = 2e-14
Identities = 80/312 (25%), Positives = 140/312 (44%), Gaps = 19/312 (6%)
Frame = +1
Query: 34 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 213
+ + + + ++HL+ ++ LSGGE QR + + DEP+S +D+K +
Sbjct: 123 INKVSQIVGISHLLNKETFRLSGGEKQRVVLGSILIMNPKALILDEPTSSIDLKGTKEIL 182
Query: 214 TTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIFLDGY 393
TT+R L + + I+A EH ++ + D I L +Y + + ++ L+
Sbjct: 183 TTLRGLKEKMSMIIA-EHKINKVLEFVDRIIILDKGKIIYDIKRDHVKEVDFEDLGLEPL 241
Query: 394 VPTENLRFRETALVFRVAETAMEEEIKRSRQFNYKEMTKTLGDFHLSIESGKFTDSEIIV 573
P+ + R R E +E ++K + +T+ D + + G I
Sbjct: 242 RPSPLPKKR------RDGEVILEAKVK------VTDGNRTIVDTEIVLRKG------ISA 283
Query: 574 MLGENGTGKTTFINILAG------------RHEADGINKSPALN----ISYKPQTIKANI 705
++G+NG+GK+T + LAG + E I+K P I+Y PQ I
Sbjct: 284 LIGDNGSGKSTLLKALAGILPINLKFYGSIKVEGKEISKLPVEKRGEIIAYLPQEIDLMF 343
Query: 706 -DKTVRNFLLEKIRDAYIHPQFQTDVLKPL--RIEEIQDREINHLSGGELQRVAITLCLG 876
KTV+ E A + ++ V+K L R +DR+ LS G+ +RVAI+ L
Sbjct: 344 TKKTVKE---EVSYPAKVRKKYDERVIKELLKRFNLPEDRDPFLLSVGQKRRVAISSLLA 400
Query: 877 RPADVYLIDEPS 912
V+L+DEP+
Sbjct: 401 TGVKVFLLDEPT 412
>sp|Q897I2|CBIO3_CLOTE Putative cobalt import ATP-binding protein cbiO 3
Length = 437
Score = 77.8 bits (190), Expect = 4e-14
Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 56/349 (16%)
Frame = +1
Query: 34 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAA 213
+ ++ L L + ++ E+SGGE QR IA + FDEP S LD +
Sbjct: 23 VSEVISLLGLNKIRDKQTTEISGGEKQRVAIASVVSMDPQIIAFDEPISQLDPISAEEVL 82
Query: 214 TTIRDLLTETNY-IVAIEHDLSVLDYLSDFICCL---------------------YGAPG 327
+I+ L + I+ +E L +++D I + Y P
Sbjct: 83 NSIKRLNRDLGKTIILVEQRLDKCFHMADRIIFMENGEIIGQGTPKNIPENIVNKYHLPT 142
Query: 328 LY------GVVTMPFSVREGINIFLDGY---VPTENLRFRETALVFRVAETAMEEEIKRS 480
+ G+ T+P +V+EG +I + + ++L+F+E + EI++
Sbjct: 143 ITYIFKEAGLQTLPITVKEGRDIIRNNKFQDLKEDDLKFKEVVM-----------EIEKL 191
Query: 481 RQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAGRHEA------- 639
F Y+ K L D + G EI+ ++GENG GK+T I+AG +
Sbjct: 192 N-FEYERGYKILKDLSFKLHRG-----EIMTVMGENGAGKSTLFKIIAGMIDKYKGKVLI 245
Query: 640 DGIN------KSPALNISYKPQ---------TIKANIDKTVRN---FLLEKIRDAYIHPQ 765
D N K I Y Q T+ + T++N + EK+
Sbjct: 246 DNKNIKSLKLKERIKKIGYLSQNPNDYFGRKTVFEEVGYTLKNIGEYKEEKVEQ------ 299
Query: 766 FQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPS 912
V+K L I ++D+ LSGGE QRVAI + ++ ++DEP+
Sbjct: 300 ----VMKLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEPT 344
Score = 52.0 bits (123), Expect = 2e-06
Identities = 30/100 (30%), Positives = 53/100 (53%)
Frame = +1
Query: 1 DILQHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSS 180
+I ++K+ K +E ++K L++++L + +LSGGE QR IAC + ++ DEP+
Sbjct: 288 NIGEYKEEK--VEQVMKLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEPTR 345
Query: 181 YLDVKQRLQAATTIRDLLTETNYIVAIEHDLSVLDYLSDF 300
+D + + I+ L IV I HD D+ D+
Sbjct: 346 GMDAEAKENLGEIIKTLAEVGKSIVVITHD---SDFAGDY 382
>sp|Q45978|HFAC_CAUCR Holdfast attachment protein C (Protein hfaC)
Length = 608
Score = 64.7 bits (156), Expect = 3e-10
Identities = 79/320 (24%), Positives = 126/320 (39%), Gaps = 47/320 (14%)
Frame = +1
Query: 94 LSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTIRDLLTETNYIVAI-EHD 270
LSGGE +R +A + DV DEP+++LD+ A T+ D L + I HD
Sbjct: 121 LSGGETRRAALARAFAEQPDVLLLDEPTNHLDIF----AIQTLEDELAASKCAALIVSHD 176
Query: 271 LSVLDYLSDFICCL-----------YGAPGLYGVVTMPFSVREGINIFLDGYVPTENLRF 417
+ L+ +++ L + + M E LD + EN
Sbjct: 177 RAFLNRVTERCFWLEHRKIRRLDKGFSEFEAWAESIMAADAEEARR--LDKVLERENAWL 234
Query: 418 --------------RETALVFRVAETAMEEEIKRS-------------RQFNYKEMTKTL 516
R L R + + E++ + R K +TK
Sbjct: 235 ARGVQGRRARNEGRRRALLALRAEKKDRQSELRGTMTMAVESAGTSGKRVVEAKGVTKRF 294
Query: 517 GDFHLSIE-SGKFTDSEIIVMLGENGTGKTTFINILAGRHEADG--INKSPALNISYKPQ 687
G+ + S + + + ++G NG GKTT + +L G E D + L +SY Q
Sbjct: 295 GERTIVENFSTRILRGDRVALVGPNGAGKTTLVKLLLGELERDAGTVQLGTNLEVSYIDQ 354
Query: 688 TIKANIDK-TVRNFLLEKIRDAYI---HPQFQTDVLKPLRIEEIQDRE-INHLSGGELQR 852
A DK TV +FL D+ I HP+ K + Q R+ + LSGGE R
Sbjct: 355 ARMALSDKITVWDFLTPGGGDSIIVRGHPKHVAGYAKEFLFTDAQLRQPVTSLSGGERNR 414
Query: 853 VAITLCLGRPADVYLIDEPS 912
+ + L P ++ ++DEP+
Sbjct: 415 LLLARALANPTNLMVLDEPT 434
Score = 44.3 bits (103), Expect = 5e-04
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Frame = +1
Query: 574 MLGENGTGKTTFINILAGRH-EADGINKS--PALNISYKPQTIKANIDKTVRNFLLEKIR 744
++G NG GK+T + ILAG+ EAD ++ P + Y Q + + + +
Sbjct: 40 LVGRNGAGKSTLLKILAGQGVEADSGERAVQPGAKVVYVSQEPEITGETLLDYATAGGAQ 99
Query: 745 DAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 918
D L P D+ LSGGE +R A+ DV L+DEP+ H
Sbjct: 100 DYEAQAALADFGLDP-------DKSAKGLSGGETRRAALARAFAEQPDVLLLDEPTNH 150
Score = 33.9 bits (76), Expect = 0.66
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 94 LSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTIRDLLTE-TNYIVAIEHD 270
LSGGE R +A ++ DEP++ LD + + DLL + ++ + HD
Sbjct: 407 LSGGERNRLLLARALANPTNLMVLDEPTNDLD----MDTLDLLEDLLADFDGTLILVSHD 462
Query: 271 LSVLDYLSDFICCLYGAPGL 330
+D L+ L G G+
Sbjct: 463 RDFIDRLASSTIALDGKGGV 482
>sp|Q737I0|CBIO4_BACC1 Putative cobalt import ATP-binding protein cbiO 4
Length = 566
Score = 64.3 bits (155), Expect = 5e-10
Identities = 87/358 (24%), Positives = 145/358 (40%), Gaps = 53/358 (14%)
Frame = +1
Query: 1 DILQHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSS 180
+ + D K I+ LK + + + + ELSGG+ Q +A A + FDEP +
Sbjct: 114 ECVNEDDMKKIVSESLKKVKMHNFHKQSPHELSGGQKQTVSLAGLLTTNAHILLFDEPLA 173
Query: 181 YLDVKQRLQAATTIRDLLTETN-YIVAIEH--------DLSVLDYLSDFICCLYGAPG-- 327
LD L I+D+ + N IV IEH DL + + + G P
Sbjct: 174 NLDPVSSLHTVELIKDIHKQYNKTIVIIEHRIEEMLNLDLDKIILIDEGEIVAIGTPEKI 233
Query: 328 LYGVVTMPFSVREGINI----------FLDGYVPTENLRFRETALVFR--------VAET 453
L + +RE + I D P ENL+ + V +T
Sbjct: 234 LASNILPSIGLREPMYIEGLKRLHFDSNNDVIYPLENLQRESVSGVINEWMEKQTFCKDT 293
Query: 454 AMEEEIKR--SRQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAG 627
++E+ + + F+Y K L + + S+ G EI+ +LG NG GK+T + L G
Sbjct: 294 PTKKELLKVENLSFSYPNKQKVLDNVNFSLFKG-----EIVALLGHNGAGKSTLAHSLIG 348
Query: 628 RHEA-------DGIN------KSPALNISYKPQTIKANIDKTVRNFLLEKIRDAYIHPQF 768
++ DG+N + ISY Q I + ++E+I + +F
Sbjct: 349 INKTKNDRILIDGVNINSWSIRKRGEVISYVMQNPNHMITQAT---VMEEISFSLKLKKF 405
Query: 769 QTDVLKPLRIEE---------IQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSA 915
+ +K +R EE ++ I LS G+ +R+ I L + ++DEP+A
Sbjct: 406 SKEEIK-VRAEETLKICDLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTA 462
Score = 32.3 bits (72), Expect = 1.9
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 37 ESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAAT 216
E LK DL LS G+ +R IA + DEP++ D Q T
Sbjct: 415 EETLKICDLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYYHYKQFMT 474
Query: 217 TIRDLLTETNYIVAIEHDLSV-LDY 288
IR L + + I HD+++ L+Y
Sbjct: 475 FIRKLAAKGLSFIFITHDMNLALEY 499
Score = 30.8 bits (68), Expect = 5.6
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Frame = +1
Query: 487 FNYKEMTK-TLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAGR--HEADGINKS 657
F YK + T+ D I G E +++ G +G+GK+T + + G +G +
Sbjct: 12 FQYKHAAQPTVKDVTFHIYPG-----EKVLIAGRSGSGKSTLAHCMNGLIPFSYEGTSTG 66
Query: 658 PALNISYKP---------------------QTIKANIDKTVRNFLLEKIRDAYIHPQFQT 774
L P Q I +++ V +L + + + +
Sbjct: 67 TILIDGKDPRKGSIFEQSKQVGTILQDQDAQFIGLTVEEDVAFYLENECVNEDDMKKIVS 126
Query: 775 DVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 918
+ LK +++ + + LSGG+ Q V++ L A + L DEP A+
Sbjct: 127 ESLKKVKMHNFHKQSPHELSGGQKQTVSLAGLLTTNAHILLFDEPLAN 174
>sp|Q734T1|CBIO3_BACC1 Putative cobalt import ATP-binding protein cbiO 3
Length = 553
Score = 63.2 bits (152), Expect = 1e-09
Identities = 84/341 (24%), Positives = 139/341 (40%), Gaps = 48/341 (14%)
Frame = +1
Query: 34 LESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLD---VKQRL 204
+ ++ L L+ + LSGG+ Q +A V + + DEP++ LD K+ L
Sbjct: 125 IAELISFLGFQDLLHQSVHTLSGGQKQLVNLAAVLVMQPKLLLLDEPTAQLDPIAAKEFL 184
Query: 205 QAATTIRDLLTETNYIVAIEHDLSVLDYLSDFICCLYGAPGLYG-----VVTMPFSVREG 369
I + L T IV EH L + L+ + C+ +Y V+ + V EG
Sbjct: 185 GLLKRINEELGIT--IVLSEHRLDEVIPLATRVICMNNGRIVYDGSPKRVIANMWEV-EG 241
Query: 370 INIFLDGYVPTENLRFRETALVFRVAETAM------------EEEIKRSRQ--------- 486
F+ +P L + + F V E M E ++R +Q
Sbjct: 242 FRPFIP-QIPRLFLEWNAKDIPFTVREAQMKMNDFSAISYVNEPIVQREKQEVILSAEHI 300
Query: 487 -FNY-KEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAGR---------- 630
F Y K L D +SIE GK+ + ++G+NGTGK+T + ILAG
Sbjct: 301 SFQYEKNSPLILRDLTVSIEKGKW-----VALVGKNGTGKSTLLTILAGLQKARRGKVKW 355
Query: 631 -----HEADGINKSPALNISYKPQTIKANIDKTVRNFLLEKIRDAYIH--PQFQTDVLKP 789
H+ D + ++ + D TV + + E+ R+ Y + LK
Sbjct: 356 NGKVIHKIDSKERFKSIGYVSQHPYYHFTFD-TVWDEVYERARELYGEQGKEIAEQQLKK 414
Query: 790 LRIEEIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPS 912
+ +++R + SGGE Q +A+ L + L+DEP+
Sbjct: 415 FWLYALKERHPHDCSGGEQQLLALCTTLLSKPTLLLLDEPT 455
Score = 38.1 bits (87), Expect = 0.035
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +1
Query: 25 KGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRL 204
K I E LK L L R + SGGE Q + ++K + DEP+ LD ++
Sbjct: 405 KEIAEQQLKKFWLYALKERHPHDCSGGEQQLLALCTTLLSKPTLLLLDEPTKGLDPWKKE 464
Query: 205 QAATTIRDLLTETNYIVAIEHDL 273
+ R L E IV HD+
Sbjct: 465 RVGELFRKLQKEGTTIVMATHDI 487
>sp|Q81CT8|CBIO3_BACCR Putative cobalt import ATP-binding protein cbiO 3
Length = 566
Score = 62.0 bits (149), Expect = 2e-09
Identities = 84/366 (22%), Positives = 141/366 (38%), Gaps = 61/366 (16%)
Frame = +1
Query: 1 DILQHKDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSS 180
+ ++ + K I+ L+ + + + ELSGG+ Q +A AD+ FDEP +
Sbjct: 114 ECVKQDNMKKIVSDSLRKVKMHTFHKQSPHELSGGQKQTVSLAGLLTTNADILLFDEPLA 173
Query: 181 YLDVKQRLQAATTIRDLLTETN-YIVAIEH--------DLSVLDYLSDFICCLYGAPG-- 327
LD + ++D+ + N IV IEH DL + + + G P
Sbjct: 174 NLDPLSAIHTIELMKDIHEQYNKTIVIIEHRIEEIFKLDLDKVILIDEGKVIAMGTPKEI 233
Query: 328 LYGVVTMPFSVREGINIFL----------DGYVPTENLRFRETALVFR--------VAET 453
L + +RE I I D P ENL+ + + V + +
Sbjct: 234 LASNILPRIGLREPIYIEALKRLHFDSNNDVIYPMENLQKEKVSNVIKEWMEKQVILKRN 293
Query: 454 AMEEEIKR--SRQFNYKEMTKTLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFINILAG 627
A +E+ + + F+Y K L + +L I G EI+ +LG NG GK+T
Sbjct: 294 AKNKELLKVENLSFSYPNKQKVLENVNLLIYEG-----EIVALLGHNGAGKSTL------ 342
Query: 628 RHEADGINKSPALNISYKPQTI------------------------------KANIDKTV 717
H GINK I+ K + I + + T+
Sbjct: 343 AHSLIGINKMKNGKIALKGEDISSWSIRKRGEIISYVMQNPNHMITQPTVFEEVSFTLTL 402
Query: 718 RNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLGRPADVYL 897
NF E+I++ +LK + ++ I LS G+ +R+ I L + +
Sbjct: 403 HNFSKEEIKNKV------EGILKICGLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLII 456
Query: 898 IDEPSA 915
+DEP+A
Sbjct: 457 LDEPTA 462
Score = 34.3 bits (77), Expect = 0.51
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Frame = +1
Query: 511 TLGDFHLSIESGKFTDSEIIVMLGENGTGKTTFIN------------------ILAGRHE 636
TL D I G E +++ G +G+GK+T + ++AG+
Sbjct: 21 TLSDITFHIYPG-----EKVLIAGRSGSGKSTLAHCINGLIPFSYEGNSTGNVLIAGKDP 75
Query: 637 ADGINKSPALNIS-----YKPQTIKANIDKTVRNFLLEKIRDAYIHPQFQTDVLKPLRIE 801
+G + + Q I +++ V +L + + +D L+ +++
Sbjct: 76 REGSIFEQSKQVGTILQDQDAQFIGLTVEEDVAFYLENECVKQDNMKKIVSDSLRKVKMH 135
Query: 802 EIQDREINHLSGGELQRVAITLCLGRPADVYLIDEPSAH 918
+ + LSGG+ Q V++ L AD+ L DEP A+
Sbjct: 136 TFHKQSPHELSGGQKQTVSLAGLLTTNADILLFDEPLAN 174
Score = 32.3 bits (72), Expect = 1.9
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 16 KDTKGILESILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVK 195
++ K +E ILK L LS G+ +R IA + DEP++ D
Sbjct: 408 EEIKNKVEGILKICGLYPFRNWPIQALSYGQKKRLTIASVLTTNPKLIILDEPTAGQDYY 467
Query: 196 QRLQAATTIRDLLTETNYIVAIEHDLSV-LDY 288
Q + I++L + V I HD+++ L+Y
Sbjct: 468 HYKQFMSFIKNLAKKGISFVVITHDMNLALEY 499
>sp|Q8K9M6|ZNUC_BUCAP High-affinity zinc uptake system ATP-binding protein znuC
Length = 238
Score = 60.8 bits (146), Expect = 5e-09
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Frame = +1
Query: 529 LSIESGKFTDSEIIVMLGENGTGKTTFINILAGRHEAD--GINKSPALNISYKPQTIKAN 702
LS S + II ++G NG GK+T I ++ G + + I +SP +++ Y PQ + N
Sbjct: 20 LSNISFSLLSNRIITLIGPNGAGKSTLIRVILGLIQPNLGNIIRSPKISVGYVPQKLYFN 79
Query: 703 --IDKTVRNFLLEKIRDAYIHPQFQTDVLKPLRIEEIQDREINHLSGGELQRVAITLCLG 876
+ TV F+ R I+ +LK ++ + +Q + +LSGGE+QR+ + L
Sbjct: 80 NLLPITVEKFMKLSKRKKNINI---LKILKRVKAQSLQYSRLQNLSGGEMQRILLARALL 136
Query: 877 RPADVYLIDEPS 912
++ ++DEP+
Sbjct: 137 NNPNLLVLDEPT 148
Score = 45.1 bits (105), Expect = 3e-04
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 43 ILKDLDLTHLMTRKCGELSGGELQRFCIACCAVAKADVYFFDEPSSYLDVKQRLQAATTI 222
ILK + L + LSGGE+QR +A + ++ DEP+ +DV +L I
Sbjct: 104 ILKRVKAQSLQYSRLQNLSGGEMQRILLARALLNNPNLLVLDEPTQGVDVMGQLDLYELI 163
Query: 223 RDLLTETN-YIVAIEHDLSVLDYLSDFICCLYGAPGLYGVVTMPFSVREGINIF 381
+ +E I+ + HDL+ + ++++ CL G F E I+IF
Sbjct: 164 NQIRSEMQCSILIVSHDLNFVMAKTNYVICLNKHICCSGTPQTVFKNLEFISIF 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,829,494
Number of Sequences: 369166
Number of extensions: 2079829
Number of successful extensions: 10449
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10070
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)