DrC_00232
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00232 (905 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P49165|RL4_URECA 60S ribosomal protein L4 (L1) 360 2e-99 sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 (L1) 350 4e-96 sp|P36578|RL4_HUMAN 60S ribosomal protein L4 (L1) 348 9e-96 sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 348 9e-96 sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B (L1B) 347 2e-95 sp|P08429|RL4A_XENLA 60S ribosomal protein L4A (L1A) 346 4e-95 sp|P50878|RL4_RAT 60S ribosomal protein L4 (L1) 345 1e-94 sp|Q9SF40|RL4B_ARATH 60S ribosomal protein L4-2 (L1) 342 1e-93 sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) 341 1e-93 sp|P49691|RL4A_ARATH 60S ribosomal protein L4-1 (L1) 340 3e-93
>sp|P49165|RL4_URECA 60S ribosomal protein L4 (L1) Length = 386 Score = 360 bits (925), Expect = 2e-99 Identities = 172/277 (62%), Positives = 212/277 (76%) Frame = +3 Query: 75 EGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVSTGAGHNNSAESWGTGRAVARIPR 254 E V P+VF APIR DI++ VH ++KN RQPYAVS AGH SAESWGTGRAVARIPR Sbjct: 18 ESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPR 77 Query: 255 VRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHRVPIQQRRYAMVTAIAACGIPALVS 434 VRGGGTHRSGQGAFGNMCRG MFAPTK WR+WH RV QRR+A+V+AIAA GIPA+V Sbjct: 78 VRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVM 137 Query: 435 ARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGCGVWEDIQKVKDSRKVRAGRGKMRN 614 ++GH I ++PE+PLV+S+ E +KKTK AV VL+ W D++KVK+SR+ RAG+GK+RN Sbjct: 138 SKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRN 197 Query: 615 RRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXXXXXXXXSPGGHIGRLAIWTKPAIE 794 RR +Q+RGP+IIY +DNGI+RAFRNIPG+T +PGGH+GR IWT+ A + Sbjct: 198 RRAIQRRGPLIIYGTDNGISRAFRNIPGITLVNVNRLNLLSMAPGGHVGRFCIWTESAFK 257 Query: 795 ELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLKS 905 +L+ IYG+ KRPS K + LP KMTN DL +LLKS Sbjct: 258 QLDNIYGTWKRPSAEKSHYNLPMPKMTNTDLSRLLKS 294
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 (L1) Length = 419 Score = 350 bits (897), Expect = 4e-96 Identities = 172/301 (57%), Positives = 217/301 (72%) Frame = +3 Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182 RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54 Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362 S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114 Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542 V Q+RYA+ +A+AA +PALV ++GH+I +VPELPLV+ ++ EG KKTK AV++LK Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKL 174 Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722 W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234 Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902 +PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILK 294 Query: 903 S 905 S Sbjct: 295 S 295
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 (L1) Length = 427 Score = 348 bits (894), Expect = 9e-96 Identities = 172/301 (57%), Positives = 216/301 (71%) Frame = +3 Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182 RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54 Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362 S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114 Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542 V Q+RYA+ +A+AA +PALV ++GH+I +VPELPLV+ ++ EG KKTK AV +LK Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKL 174 Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722 W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234 Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902 +PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILK 294 Query: 903 S 905 S Sbjct: 295 S 295
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 Length = 422 Score = 348 bits (894), Expect = 9e-96 Identities = 172/301 (57%), Positives = 216/301 (71%) Frame = +3 Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182 RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54 Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362 S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114 Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542 V Q+RYA+ +A+AA +PALV ++GH+I +VPELPLV+ ++ EG KKTK AV +LK Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKL 174 Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722 W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234 Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902 +PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILK 294 Query: 903 S 905 S Sbjct: 295 S 295
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B (L1B) Length = 396 Score = 347 bits (891), Expect = 2e-95 Identities = 167/301 (55%), Positives = 214/301 (71%) Frame = +3 Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182 RPLI VY T V P+VF APIR DI++ VH +RKN+RQPYAV Sbjct: 4 RPLISVYSEKGETSGKN----------VTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 53 Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362 S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R Sbjct: 54 SKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 113 Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542 V Q+RYA+ +A+AA +PAL+ ++GH+I ++PE+PLV+ ++ E KKTK AV +LK Sbjct: 114 VNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKL 173 Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722 W DI+KV S+++RAG+GKMRNRR +Q+RGP +IY +NGI +AFRNIPG+T Sbjct: 174 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSK 233 Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902 +PGGH+GR IWT+ A +L+ +YG+ ++ ++ K D+ LP KMTN DL ++LK Sbjct: 234 LNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILK 293 Query: 903 S 905 S Sbjct: 294 S 294
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4A (L1A) Length = 396 Score = 346 bits (888), Expect = 4e-95 Identities = 167/301 (55%), Positives = 216/301 (71%) Frame = +3 Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182 RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV Sbjct: 9 RPLISVYSEK---GESSGK-------NVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAV 58 Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362 S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R Sbjct: 59 SKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 118 Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542 V Q+RYA+ +A+AA +PAL+ ++GH+I ++PE+PLV+ ++ E KKTK AV +LK Sbjct: 119 VNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKL 178 Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722 W DI+KV S+++RAG+GKMRNRR +Q+RGP +IY +NG+ +AFRNIPG+T Sbjct: 179 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSK 238 Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902 +PGGH+GR IWT+ A +L+ +YG+ ++ ++ K D+ LP KMTN DL ++LK Sbjct: 239 LNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILK 298 Query: 903 S 905 S Sbjct: 299 S 299
>sp|P50878|RL4_RAT 60S ribosomal protein L4 (L1) Length = 421 Score = 345 bits (885), Expect = 1e-94 Identities = 170/301 (56%), Positives = 215/301 (71%) Frame = +3 Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182 RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54 Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362 S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114 Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542 V Q+RYA+ +A+AA +PALV ++GH + +VPELPLV+ ++ E KKTK AV++LK Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKL 174 Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722 W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234 Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902 +PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILK 294 Query: 903 S 905 S Sbjct: 295 S 295
>sp|Q9SF40|RL4B_ARATH 60S ribosomal protein L4-2 (L1) Length = 406 Score = 342 bits (876), Expect = 1e-93 Identities = 165/304 (54%), Positives = 215/304 (70%), Gaps = 3/304 (0%) Frame = +3 Query: 3 RPLIGVYKVN--LPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPY 176 RPL+ + ++ + TD S TV P V AP+R DI++ VH I NSRQPY Sbjct: 7 RPLVTIQTLDGDMSTDQSS---------TVVLPDVMTAPVRPDIVNFVHAQISNNSRQPY 57 Query: 177 AVSTGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWH 356 AVS AGH SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGG MFAPTK+WR+WH Sbjct: 58 AVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117 Query: 357 HRVPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLK 536 RV + +R+A+V+AIAA +PALV ARGHKI VPE+PLV+S+ E ++KT A+KVLK Sbjct: 118 RRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLK 177 Query: 537 GCGVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNG-ITRAFRNIPGVTXXX 713 G ++D +K K+S +R G+GKMRNRRY+ ++GP+++Y ++ I +AFRN+PGV Sbjct: 178 QIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCH 237 Query: 714 XXXXXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFK 893 +PGGH+GR IWTK A E+LE IYGS ++PSE K +VLP+AKM N DL + Sbjct: 238 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLAR 297 Query: 894 LLKS 905 ++ S Sbjct: 298 IINS 301
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) Length = 408 Score = 341 bits (875), Expect = 1e-93 Identities = 164/304 (53%), Positives = 216/304 (71%), Gaps = 3/304 (0%) Frame = +3 Query: 3 RPLIGVYKV--NLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPY 176 RPL+ V + ++ TD ++ TV P V A IR DI++ VH I KNSRQPY Sbjct: 9 RPLVTVQSLEGDMATDQTQ---------TVALPDVMKASIRPDIVTFVHSNISKNSRQPY 59 Query: 177 AVSTGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWH 356 AVS AGH SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAPTK+WR+WH Sbjct: 60 AVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 119 Query: 357 HRVPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLK 536 ++ + Q+RYA+V+AIAA +P+LV ARGHKI VPELPLV+S+ EG+++T A+KVLK Sbjct: 120 RKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLK 179 Query: 537 GCGVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNG-ITRAFRNIPGVTXXX 713 G + D +K KDS +R G+GKMRNRRY+ ++GP+I+Y ++ + +AFRNIPG+ Sbjct: 180 QIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIIN 239 Query: 714 XXXXXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFK 893 +PGGH+GR +WTK A E+L+ IYGS + SE K +VLP++KM N DL + Sbjct: 240 VERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLAR 299 Query: 894 LLKS 905 ++ S Sbjct: 300 IINS 303
>sp|P49691|RL4A_ARATH 60S ribosomal protein L4-1 (L1) Length = 407 Score = 340 bits (872), Expect = 3e-93 Identities = 165/304 (54%), Positives = 215/304 (70%), Gaps = 3/304 (0%) Frame = +3 Query: 3 RPLIGVYKVN--LPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPY 176 RPL+ V ++ + TD S TV P V AP+R DI++ VH I NSRQPY Sbjct: 8 RPLVTVQGLDGDMSTDQST---------TVTLPDVMTAPVRPDIVNFVHAQISNNSRQPY 58 Query: 177 AVSTGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWH 356 AVS AGH SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGG MFAPTK+WR+WH Sbjct: 59 AVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118 Query: 357 HRVPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLK 536 RV + +R+A+V+AIAA +PALV ARGHKI VPE+PLV+S+ E ++KT A+KVLK Sbjct: 119 RRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLK 178 Query: 537 GCGVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNG-ITRAFRNIPGVTXXX 713 G ++D +K K+S +R G+GKMRNRRY+ ++GP++++ ++ I +AFRN+PGV Sbjct: 179 QIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCH 238 Query: 714 XXXXXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFK 893 +PGGH+GR IWTK A E+LE IYGS ++PSE K +VLP+AKM N DL + Sbjct: 239 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLAR 298 Query: 894 LLKS 905 ++ S Sbjct: 299 IINS 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,825,851
Number of Sequences: 369166
Number of extensions: 2291181
Number of successful extensions: 6373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6333
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
