Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P20
(166 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49669|RL4_TRYBB 60S ribosomal protein L4 (L1) 48 6e-06
sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 (L1) 48 8e-06
sp|P36578|RL4_HUMAN 60S ribosomal protein L4 (L1) 48 8e-06
sp|P50878|RL4_RAT 60S ribosomal protein L4 (L1) 48 8e-06
sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 48 8e-06
sp|Q28346|RL4_CANFA 60S ribosomal protein L4 (L1) 48 8e-06
sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B (L1B) 48 8e-06
sp|P08429|RL4A_XENLA 60S ribosomal protein L4A (L1A) 48 8e-06
sp|P49165|RL4_URECA 60S ribosomal protein L4 (L1) 47 1e-05
sp|P09180|RL4_DROME 60S ribosomal protein L4 (L1) 46 2e-05
>sp|P49669|RL4_TRYBB 60S ribosomal protein L4 (L1)
Length = 374
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +1
Query: 37 ECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
E + GT P+VF APIR D++ VH + KNSRQPYAV+
Sbjct: 14 EDKVVGTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVN 54
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 (L1)
Length = 419
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 55
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 (L1)
Length = 427
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 55
>sp|P50878|RL4_RAT 60S ribosomal protein L4 (L1)
Length = 421
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 55
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4
Length = 422
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 55
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 (L1)
Length = 420
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 21 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 54
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B (L1B)
Length = 396
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 21 VTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 54
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4A (L1A)
Length = 396
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 58 VKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
V P+VF APIR DI++ VH +RKN+RQPYAVS
Sbjct: 26 VTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVS 59
>sp|P49165|RL4_URECA 60S ribosomal protein L4 (L1)
Length = 386
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +1
Query: 49 EGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
E V P+VF APIR DI++ VH ++KN RQPYAVS
Sbjct: 18 ESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVS 54
>sp|P09180|RL4_DROME 60S ribosomal protein L4 (L1)
Length = 401
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +1
Query: 31 KLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVS 159
K E + + + P+VF APIR D+++ VH L+R+N+RQ YAVS
Sbjct: 16 KNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVS 58
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,805,428
Number of Sequences: 369166
Number of extensions: 235278
Number of successful extensions: 583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)