Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L06
(905 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49165|RL4_URECA 60S ribosomal protein L4 (L1) 360 2e-99
sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 (L1) 350 4e-96
sp|P36578|RL4_HUMAN 60S ribosomal protein L4 (L1) 348 9e-96
sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 348 9e-96
sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B (L1B) 347 2e-95
sp|P08429|RL4A_XENLA 60S ribosomal protein L4A (L1A) 346 4e-95
sp|P50878|RL4_RAT 60S ribosomal protein L4 (L1) 345 1e-94
sp|Q9SF40|RL4B_ARATH 60S ribosomal protein L4-2 (L1) 342 1e-93
sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) 341 1e-93
sp|P49691|RL4A_ARATH 60S ribosomal protein L4-1 (L1) 340 3e-93
>sp|P49165|RL4_URECA 60S ribosomal protein L4 (L1)
Length = 386
Score = 360 bits (925), Expect = 2e-99
Identities = 172/277 (62%), Positives = 212/277 (76%)
Frame = +3
Query: 75 EGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAVSTGAGHNNSAESWGTGRAVARIPR 254
E V P+VF APIR DI++ VH ++KN RQPYAVS AGH SAESWGTGRAVARIPR
Sbjct: 18 ESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPR 77
Query: 255 VRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHRVPIQQRRYAMVTAIAACGIPALVS 434
VRGGGTHRSGQGAFGNMCRG MFAPTK WR+WH RV QRR+A+V+AIAA GIPA+V
Sbjct: 78 VRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVM 137
Query: 435 ARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGCGVWEDIQKVKDSRKVRAGRGKMRN 614
++GH I ++PE+PLV+S+ E +KKTK AV VL+ W D++KVK+SR+ RAG+GK+RN
Sbjct: 138 SKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRN 197
Query: 615 RRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXXXXXXXXSPGGHIGRLAIWTKPAIE 794
RR +Q+RGP+IIY +DNGI+RAFRNIPG+T +PGGH+GR IWT+ A +
Sbjct: 198 RRAIQRRGPLIIYGTDNGISRAFRNIPGITLVNVNRLNLLSMAPGGHVGRFCIWTESAFK 257
Query: 795 ELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLKS 905
+L+ IYG+ KRPS K + LP KMTN DL +LLKS
Sbjct: 258 QLDNIYGTWKRPSAEKSHYNLPMPKMTNTDLSRLLKS 294
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 (L1)
Length = 419
Score = 350 bits (897), Expect = 4e-96
Identities = 172/301 (57%), Positives = 217/301 (72%)
Frame = +3
Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182
RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV
Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54
Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362
S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R
Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114
Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542
V Q+RYA+ +A+AA +PALV ++GH+I +VPELPLV+ ++ EG KKTK AV++LK
Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKL 174
Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722
W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T
Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234
Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902
+PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK
Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILK 294
Query: 903 S 905
S
Sbjct: 295 S 295
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 (L1)
Length = 427
Score = 348 bits (894), Expect = 9e-96
Identities = 172/301 (57%), Positives = 216/301 (71%)
Frame = +3
Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182
RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV
Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54
Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362
S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R
Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114
Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542
V Q+RYA+ +A+AA +PALV ++GH+I +VPELPLV+ ++ EG KKTK AV +LK
Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKL 174
Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722
W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T
Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234
Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902
+PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK
Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILK 294
Query: 903 S 905
S
Sbjct: 295 S 295
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4
Length = 422
Score = 348 bits (894), Expect = 9e-96
Identities = 172/301 (57%), Positives = 216/301 (71%)
Frame = +3
Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182
RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV
Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54
Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362
S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R
Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114
Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542
V Q+RYA+ +A+AA +PALV ++GH+I +VPELPLV+ ++ EG KKTK AV +LK
Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKL 174
Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722
W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T
Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234
Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902
+PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK
Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILK 294
Query: 903 S 905
S
Sbjct: 295 S 295
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B (L1B)
Length = 396
Score = 347 bits (891), Expect = 2e-95
Identities = 167/301 (55%), Positives = 214/301 (71%)
Frame = +3
Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182
RPLI VY T V P+VF APIR DI++ VH +RKN+RQPYAV
Sbjct: 4 RPLISVYSEKGETSGKN----------VTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 53
Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362
S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R
Sbjct: 54 SKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 113
Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542
V Q+RYA+ +A+AA +PAL+ ++GH+I ++PE+PLV+ ++ E KKTK AV +LK
Sbjct: 114 VNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKL 173
Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722
W DI+KV S+++RAG+GKMRNRR +Q+RGP +IY +NGI +AFRNIPG+T
Sbjct: 174 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSK 233
Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902
+PGGH+GR IWT+ A +L+ +YG+ ++ ++ K D+ LP KMTN DL ++LK
Sbjct: 234 LNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILK 293
Query: 903 S 905
S
Sbjct: 294 S 294
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4A (L1A)
Length = 396
Score = 346 bits (888), Expect = 4e-95
Identities = 167/301 (55%), Positives = 216/301 (71%)
Frame = +3
Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182
RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV
Sbjct: 9 RPLISVYSEK---GESSGK-------NVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAV 58
Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362
S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R
Sbjct: 59 SKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 118
Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542
V Q+RYA+ +A+AA +PAL+ ++GH+I ++PE+PLV+ ++ E KKTK AV +LK
Sbjct: 119 VNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKL 178
Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722
W DI+KV S+++RAG+GKMRNRR +Q+RGP +IY +NG+ +AFRNIPG+T
Sbjct: 179 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSK 238
Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902
+PGGH+GR IWT+ A +L+ +YG+ ++ ++ K D+ LP KMTN DL ++LK
Sbjct: 239 LNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILK 298
Query: 903 S 905
S
Sbjct: 299 S 299
>sp|P50878|RL4_RAT 60S ribosomal protein L4 (L1)
Length = 421
Score = 345 bits (885), Expect = 1e-94
Identities = 170/301 (56%), Positives = 215/301 (71%)
Frame = +3
Query: 3 RPLIGVYKVNLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPYAV 182
RPLI VY +S K V P+VF APIR DI++ VH +RKN+RQPYAV
Sbjct: 5 RPLISVYSEK---GESSGK-------NVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAV 54
Query: 183 STGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWHHR 362
S AGH SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAPTK WR+WH R
Sbjct: 55 SELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR 114
Query: 363 VPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLKGC 542
V Q+RYA+ +A+AA +PALV ++GH + +VPELPLV+ ++ E KKTK AV++LK
Sbjct: 115 VNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKL 174
Query: 543 GVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNGITRAFRNIPGVTXXXXXX 722
W DI+KV S+++RAG+GKMRNRR +Q+RGP IIY DNGI +AFRNIPG+T
Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSK 234
Query: 723 XXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFKLLK 902
+PGGH+GR IWT+ A +L+++YG+ ++ + K ++ LP KM N DL ++LK
Sbjct: 235 LNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILK 294
Query: 903 S 905
S
Sbjct: 295 S 295
>sp|Q9SF40|RL4B_ARATH 60S ribosomal protein L4-2 (L1)
Length = 406
Score = 342 bits (876), Expect = 1e-93
Identities = 165/304 (54%), Positives = 215/304 (70%), Gaps = 3/304 (0%)
Frame = +3
Query: 3 RPLIGVYKVN--LPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPY 176
RPL+ + ++ + TD S TV P V AP+R DI++ VH I NSRQPY
Sbjct: 7 RPLVTIQTLDGDMSTDQSS---------TVVLPDVMTAPVRPDIVNFVHAQISNNSRQPY 57
Query: 177 AVSTGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWH 356
AVS AGH SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGG MFAPTK+WR+WH
Sbjct: 58 AVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Query: 357 HRVPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLK 536
RV + +R+A+V+AIAA +PALV ARGHKI VPE+PLV+S+ E ++KT A+KVLK
Sbjct: 118 RRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLK 177
Query: 537 GCGVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNG-ITRAFRNIPGVTXXX 713
G ++D +K K+S +R G+GKMRNRRY+ ++GP+++Y ++ I +AFRN+PGV
Sbjct: 178 QIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCH 237
Query: 714 XXXXXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFK 893
+PGGH+GR IWTK A E+LE IYGS ++PSE K +VLP+AKM N DL +
Sbjct: 238 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLAR 297
Query: 894 LLKS 905
++ S
Sbjct: 298 IINS 301
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1)
Length = 408
Score = 341 bits (875), Expect = 1e-93
Identities = 164/304 (53%), Positives = 216/304 (71%), Gaps = 3/304 (0%)
Frame = +3
Query: 3 RPLIGVYKV--NLPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPY 176
RPL+ V + ++ TD ++ TV P V A IR DI++ VH I KNSRQPY
Sbjct: 9 RPLVTVQSLEGDMATDQTQ---------TVALPDVMKASIRPDIVTFVHSNISKNSRQPY 59
Query: 177 AVSTGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWH 356
AVS AGH SAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGG MFAPTK+WR+WH
Sbjct: 60 AVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 119
Query: 357 HRVPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLK 536
++ + Q+RYA+V+AIAA +P+LV ARGHKI VPELPLV+S+ EG+++T A+KVLK
Sbjct: 120 RKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLK 179
Query: 537 GCGVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNG-ITRAFRNIPGVTXXX 713
G + D +K KDS +R G+GKMRNRRY+ ++GP+I+Y ++ + +AFRNIPG+
Sbjct: 180 QIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIIN 239
Query: 714 XXXXXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFK 893
+PGGH+GR +WTK A E+L+ IYGS + SE K +VLP++KM N DL +
Sbjct: 240 VERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLAR 299
Query: 894 LLKS 905
++ S
Sbjct: 300 IINS 303
>sp|P49691|RL4A_ARATH 60S ribosomal protein L4-1 (L1)
Length = 407
Score = 340 bits (872), Expect = 3e-93
Identities = 165/304 (54%), Positives = 215/304 (70%), Gaps = 3/304 (0%)
Frame = +3
Query: 3 RPLIGVYKVN--LPTDDSKPKLECSIEGTVKFPSVFNAPIRMDILSTVHDLIRKNSRQPY 176
RPL+ V ++ + TD S TV P V AP+R DI++ VH I NSRQPY
Sbjct: 8 RPLVTVQGLDGDMSTDQST---------TVTLPDVMTAPVRPDIVNFVHAQISNNSRQPY 58
Query: 177 AVSTGAGHNNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKVWRKWH 356
AVS AGH SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGG MFAPTK+WR+WH
Sbjct: 59 AVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Query: 357 HRVPIQQRRYAMVTAIAACGIPALVSARGHKINKVPELPLVISEEYEGLKKTKMAVKVLK 536
RV + +R+A+V+AIAA +PALV ARGHKI VPE+PLV+S+ E ++KT A+KVLK
Sbjct: 119 RRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLK 178
Query: 537 GCGVWEDIQKVKDSRKVRAGRGKMRNRRYVQKRGPIIIYKSDNG-ITRAFRNIPGVTXXX 713
G ++D +K K+S +R G+GKMRNRRY+ ++GP++++ ++ I +AFRN+PGV
Sbjct: 179 QIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCH 238
Query: 714 XXXXXXXXXSPGGHIGRLAIWTKPAIEELEKIYGSLKRPSETKVDFVLPKAKMTNCDLFK 893
+PGGH+GR IWTK A E+LE IYGS ++PSE K +VLP+AKM N DL +
Sbjct: 239 VERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLAR 298
Query: 894 LLKS 905
++ S
Sbjct: 299 IINS 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,825,851
Number of Sequences: 369166
Number of extensions: 2291181
Number of successful extensions: 6373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6333
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)