Planaria EST Database

DrC_00224

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00224
         (669 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97686|NRCAM_RAT  Neuronal cell adhesion molecule precurs...    39   0.012
sp|Q810U4|NRCAM_MOUSE  Neuronal cell adhesion molecule precu...    39   0.012
sp|Q92823|NRCAM_HUMAN  Neuronal cell adhesion molecule precu...    39   0.012
sp|P35331|NRCAM_CHICK  Neuronal cell adhesion molecule precu...    37   0.036
sp|Q05695|L1CAM_RAT  Neural cell adhesion molecule L1 precur...    36   0.10 
sp|P32004|L1CAM_HUMAN  Neural cell adhesion molecule L1 prec...    36   0.10 
sp|P11627|L1CAM_MOUSE  Neural cell adhesion molecule L1 prec...    36   0.10 
sp|Q90478|L1CA1_BRARE  Neural cell adhesion molecule L1.1 (N...    33   0.52 
sp|O94653|BMS1_SCHPO  Ribosome biogenesis protein BMS1 homolog     32   1.2  
sp|Q810U3|NFASC_MOUSE  Neurofascin precursor                       31   2.6  

>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
            cell adhesion molecule) (Ng-CAM-related) (rBravo)
            (Ankyrin-binding cell adhesion molecule NrCAM)
          Length = 1214

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-EREDHEPDMMSGGT-GDRKLS 232
            +  RNKG  Y + + E  H  DPE +  +E    F  Y + EDH+P      T  DR + 
Sbjct: 1099 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVK 1157

Query: 233  ITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
                     D GE  N       FNEDGS IG+Y        A
Sbjct: 1158 KEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1195

>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
            cell adhesion molecule) (Ng-CAM-related) (mBravo)
          Length = 1256

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-EREDHEPDMMSGGT-GDRKLS 232
            +  RNKG  Y + + E  H  DPE +  +E    F  Y + EDH+P      T  DR + 
Sbjct: 1141 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVK 1199

Query: 233  ITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
                     D GE  N       FNEDGS IG+Y        A
Sbjct: 1200 KEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1237

>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
            cell adhesion molecule) (Ng-CAM-related) (hBravo)
          Length = 1304

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-EREDHEPDMMSGGT-GDRKLS 232
            +  RNKG  Y + + E  H  DPE +  +E    F  Y + EDH+P      T  DR + 
Sbjct: 1189 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVK 1247

Query: 233  ITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
                     D GE  N       FNEDGS IG+Y        A
Sbjct: 1248 KEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1285

>sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
            cell adhesion molecule) (Ng-CAM-related) (hBravo)
          Length = 1284

 Score = 37.4 bits (85), Expect = 0.036
 Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-----EREDHEPDMMSGGT-GD 220
            +  RNKG  Y + + E  H  DPE +  +E    F  Y     + EDH+P      T  D
Sbjct: 1165 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYRSLESDAEDHKPLKKGSRTPSD 1223

Query: 221  RKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
            R +          D GE  N       FNEDGS IG+Y        A
Sbjct: 1224 RTVKKEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1265

>sp|Q05695|L1CAM_RAT Neural cell adhesion molecule L1 precursor (N-CAM L1) (Nerve-growth
            factor-inducible large external glycoprotein) (NILE)
          Length = 1259

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 247
            +  R+KG  Y +   E        + +++E F  Y   + + +  + G+    L+     
Sbjct: 1144 FIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKP 1203

Query: 248  VGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
            +GS DD   D        FNEDGS IG+Y       AA
Sbjct: 1204 LGS-DDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAA 1240

>sp|P32004|L1CAM_HUMAN Neural cell adhesion molecule L1 precursor (N-CAM L1) (CD171 antigen)
          Length = 1257

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 247
            +  R+KG  Y +   E        + +++E F  Y   + + +  + G+    L+     
Sbjct: 1142 FIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKP 1201

Query: 248  VGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
            +GS DD   D        FNEDGS IG+Y       AA
Sbjct: 1202 LGS-DDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAA 1238

>sp|P11627|L1CAM_MOUSE Neural cell adhesion molecule L1 precursor (N-CAM L1)
          Length = 1260

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 247
            +  R+KG  Y +   E        + +++E F  Y   + + +  + G+    L+     
Sbjct: 1145 FIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKP 1204

Query: 248  VGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 361
            +GS DD   D        FNEDGS IG+Y       AA
Sbjct: 1205 LGS-DDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAA 1241

>sp|Q90478|L1CA1_BRARE Neural cell adhesion molecule L1.1 (N-CAM L1.1)
          Length = 1197

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYE--REDHEPDMMSGGTGDRKLSITG 241
            Y  ++KG  Y +   E   G    ++++++ F  Y     D E   +S  +G        
Sbjct: 1074 YIKKSKGGKYSVKDKEEGQGDAANQKLKDDAFGEYRSLESDMEKCSISQPSGCE------ 1127

Query: 242  HSVGSADDGELDNYDLDPSNFNEDGSIIGKY 334
             S  S++D   D  D     FNEDGS IG+Y
Sbjct: 1128 -SKRSSNDSLADYGDSVDIQFNEDGSFIGQY 1157

>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein BMS1 homolog
          Length = 1121

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +2

Query: 98  QLDKIERQHGYDPEKEVQ----EEMFKPYEREDHEPDMMSGGTGDRKLSITGHSVGSADD 265
           QL + ++  G D    +Q     +     +RE  E D +   T  +   +    +   D+
Sbjct: 373 QLQEAQQPLGVDGNSGLQLFSNSDAIDTVDRESSEIDNVGRKTRRQPTGLINQELIKEDE 432

Query: 266 GELDNYDLDPSNFNEDGSIIGKYGA 340
           G  D+ D++ ++ NED    GK GA
Sbjct: 433 GAFDDSDVNSADENEDVDFTGKIGA 457

>sp|Q810U3|NFASC_MOUSE Neurofascin precursor
          Length = 1240

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = +2

Query: 68   YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 247
            +  R++G  Y + + ++     PE   +E+    Y  ED++P   S  + D  +      
Sbjct: 1130 FIKRSRGGKYPVRE-KKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQ--- 1185

Query: 248  VGSADDGELDNYDLDPSNFNEDGSIIGKY 334
               +DD  +D  +     FNEDGS IG+Y
Sbjct: 1186 --ESDDSLVDYGEGGEGQFNEDGSFIGQY 1212

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,908,255
Number of Sequences: 369166
Number of extensions: 1504362
Number of successful extensions: 4141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4138
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00224

  1. Dr_sW_006_I17
  2. Dr_sW_019_O19
  3. Dr_sW_001_I22