Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_I22
(500 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q816R0|MOAB_BACCR Molybdenum cofactor biosynthesis prote... 30 2.5
sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule precurs... 30 3.2
sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precu... 30 3.2
sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule precu... 30 3.2
sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule precu... 30 3.2
sp|Q81KI3|MOAB_BACAN Molybdenum cofactor biosynthesis prote... 29 5.5
sp|O94880|PHF14_HUMAN PHD finger protein 14 29 5.5
sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit ... 29 5.5
sp|P0A3W0|VIRB4_AGRTU Protein virB4 precursor >gi|61250194|... 29 7.1
sp|P19571|AMT6_BACS7 Glucan 1,4-alpha-maltohexaosidase prec... 28 9.3
>sp|Q816R0|MOAB_BACCR Molybdenum cofactor biosynthesis protein B
Length = 169
Score = 30.4 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 1 YEREDHEPVMMSGGTGVRKLSITGHSVGSADDGEL 105
Y +ED + V+ +GGTG+ K +T +V + D E+
Sbjct: 68 YHKEDVDVVLTNGGTGITKRDVTIEAVSALLDKEI 102
>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (rBravo)
(Ankyrin-binding cell adhesion molecule NrCAM)
Length = 1214
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 4 EREDHEPVMMSGGTGVRKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRS 183
+ EDH+P+ G R S +DD +D + FNEDGS IG+Y
Sbjct: 1137 DAEDHKPLKK----GSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 1192
Query: 184 RAA 192
A
Sbjct: 1193 EPA 1195
>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (mBravo)
Length = 1256
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 4 EREDHEPVMMSGGTGVRKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRS 183
+ EDH+P+ G R S +DD +D + FNEDGS IG+Y
Sbjct: 1179 DAEDHKPLKK----GSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 1234
Query: 184 RAA 192
A
Sbjct: 1235 EPA 1237
>sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (hBravo)
Length = 1284
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 4 EREDHEPVMMSGGTGVRKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRS 183
+ EDH+P+ G R S +DD +D + FNEDGS IG+Y
Sbjct: 1207 DAEDHKPLKK----GSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 1262
Query: 184 RAA 192
A
Sbjct: 1263 EPA 1265
>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (hBravo)
Length = 1304
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 4 EREDHEPVMMSGGTGVRKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRS 183
+ EDH+P+ G R S +DD +D + FNEDGS IG+Y
Sbjct: 1227 DAEDHKPLKK----GSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEK 1282
Query: 184 RAA 192
A
Sbjct: 1283 EPA 1285
>sp|Q81KI3|MOAB_BACAN Molybdenum cofactor biosynthesis protein B
Length = 169
Score = 29.3 bits (64), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 1 YEREDHEPVMMSGGTGVRKLSITGHSVGS 87
Y RED + V+ +GGTG+ K +T +V +
Sbjct: 68 YHREDVDVVLTNGGTGITKRDVTIEAVSA 96
>sp|O94880|PHF14_HUMAN PHD finger protein 14
Length = 888
Score = 29.3 bits (64), Expect = 5.5
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 10 EDHEPVMMSGGTGVRKLSITGHSVGSADDGEL--DNYDLDPSNFNEDGSIIGK 162
EDH GG +K + S SADD EL D+ L S NED I+ K
Sbjct: 257 EDHSSPASEGGCKKKKSKVL--SRNSADDEELTNDSLTLSQSKSNEDSLILEK 307
>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1)
(EBP-1) [Contains: Nuclear factor NF-kappa-B p50
subunit]
Length = 522
Score = 29.3 bits (64), Expect = 5.5
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 4 EREDHEPVMMSG-GTGVRKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGK 162
E D++ V SG T RKLS + G DG L + + P N+ +DG I GK
Sbjct: 471 ELRDNDSVCDSGVETSFRKLSFSESLTG---DGPLLSLNKMPHNYGQDGPIEGK 521
>sp|P0A3W0|VIRB4_AGRTU Protein virB4 precursor
sp|P0A3W1|VIRB4_AGRT9 Protein virB4 precursor
Length = 789
Score = 28.9 bits (63), Expect = 7.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 70 GHSVGSADDGELDNYDLDPS 129
GH++G A DGE+D LDPS
Sbjct: 574 GHALGWAFDGEVDEVKLDPS 593
>sp|P19571|AMT6_BACS7 Glucan 1,4-alpha-maltohexaosidase precursor (G6-amylase)
(Maltohexaose-producing amylase)
(Exo-maltohexaohydrolase)
Length = 518
Score = 28.5 bits (62), Expect = 9.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 70 GHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAAMT 198
G S G D YDL FN+ G++ KYG + +AA+T
Sbjct: 83 GASQNDVGYGAYDLYDL--GEFNQKGTVRTKYGTRSQLQAAVT 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,305,586
Number of Sequences: 369166
Number of extensions: 1067736
Number of successful extensions: 2933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2933
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)