Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_O19
(651 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule precurs... 39 0.012
sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precu... 39 0.012
sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule precu... 39 0.012
sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule precu... 37 0.034
sp|Q05695|L1CAM_RAT Neural cell adhesion molecule L1 precur... 36 0.099
sp|P32004|L1CAM_HUMAN Neural cell adhesion molecule L1 prec... 36 0.099
sp|P11627|L1CAM_MOUSE Neural cell adhesion molecule L1 prec... 36 0.099
sp|Q90478|L1CA1_BRARE Neural cell adhesion molecule L1.1 (N... 33 0.49
sp|O94653|BMS1_SCHPO Ribosome biogenesis protein BMS1 homolog 32 1.1
sp|Q810U3|NFASC_MOUSE Neurofascin precursor 31 2.4
>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (rBravo)
(Ankyrin-binding cell adhesion molecule NrCAM)
Length = 1214
Score = 38.9 bits (89), Expect = 0.012
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-EREDHEPDMMSGGT-GDRKLS 220
+ RNKG Y + + E H DPE + +E F Y + EDH+P T DR +
Sbjct: 1099 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVK 1157
Query: 221 ITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
D GE N FNEDGS IG+Y A
Sbjct: 1158 KEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1195
>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (mBravo)
Length = 1256
Score = 38.9 bits (89), Expect = 0.012
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-EREDHEPDMMSGGT-GDRKLS 220
+ RNKG Y + + E H DPE + +E F Y + EDH+P T DR +
Sbjct: 1141 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVK 1199
Query: 221 ITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
D GE N FNEDGS IG+Y A
Sbjct: 1200 KEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1237
>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (hBravo)
Length = 1304
Score = 38.9 bits (89), Expect = 0.012
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-EREDHEPDMMSGGT-GDRKLS 220
+ RNKG Y + + E H DPE + +E F Y + EDH+P T DR +
Sbjct: 1189 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYSDAEDHKPLKKGSRTPSDRTVK 1247
Query: 221 ITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
D GE N FNEDGS IG+Y A
Sbjct: 1248 KEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1285
>sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (hBravo)
Length = 1284
Score = 37.4 bits (85), Expect = 0.034
Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEE---MFKPY-----EREDHEPDMMSGGT-GD 208
+ RNKG Y + + E H DPE + +E F Y + EDH+P T D
Sbjct: 1165 FIRRNKGGKYPVKEKEDAHA-DPEIQPMKEDDGTFGEYRSLESDAEDHKPLKKGSRTPSD 1223
Query: 209 RKLSITGHSVGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
R + D GE N FNEDGS IG+Y A
Sbjct: 1224 RTVKKEDSDDSLVDYGEGVN-----GQFNEDGSFIGQYSGKKEKEPA 1265
>sp|Q05695|L1CAM_RAT Neural cell adhesion molecule L1 precursor (N-CAM L1) (Nerve-growth
factor-inducible large external glycoprotein) (NILE)
Length = 1259
Score = 35.8 bits (81), Expect = 0.099
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 235
+ R+KG Y + E + +++E F Y + + + + G+ L+
Sbjct: 1144 FIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKP 1203
Query: 236 VGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
+GS DD D FNEDGS IG+Y AA
Sbjct: 1204 LGS-DDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAA 1240
>sp|P32004|L1CAM_HUMAN Neural cell adhesion molecule L1 precursor (N-CAM L1) (CD171 antigen)
Length = 1257
Score = 35.8 bits (81), Expect = 0.099
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 235
+ R+KG Y + E + +++E F Y + + + + G+ L+
Sbjct: 1142 FIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKP 1201
Query: 236 VGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
+GS DD D FNEDGS IG+Y AA
Sbjct: 1202 LGS-DDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAA 1238
>sp|P11627|L1CAM_MOUSE Neural cell adhesion molecule L1 precursor (N-CAM L1)
Length = 1260
Score = 35.8 bits (81), Expect = 0.099
Identities = 26/98 (26%), Positives = 41/98 (41%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 235
+ R+KG Y + E + +++E F Y + + + + G+ L+
Sbjct: 1145 FIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKP 1204
Query: 236 VGSADDGELDNYDLDPSNFNEDGSIIGKYGANPRSRAA 349
+GS DD D FNEDGS IG+Y AA
Sbjct: 1205 LGS-DDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAA 1241
>sp|Q90478|L1CA1_BRARE Neural cell adhesion molecule L1.1 (N-CAM L1.1)
Length = 1197
Score = 33.5 bits (75), Expect = 0.49
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYE--REDHEPDMMSGGTGDRKLSITG 229
Y ++KG Y + E G ++++++ F Y D E +S +G
Sbjct: 1074 YIKKSKGGKYSVKDKEEGQGDAANQKLKDDAFGEYRSLESDMEKCSISQPSGCE------ 1127
Query: 230 HSVGSADDGELDNYDLDPSNFNEDGSIIGKY 322
S S++D D D FNEDGS IG+Y
Sbjct: 1128 -SKRSSNDSLADYGDSVDIQFNEDGSFIGQY 1157
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein BMS1 homolog
Length = 1121
Score = 32.3 bits (72), Expect = 1.1
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +2
Query: 86 QLDKIERQHGYDPEKEVQ----EEMFKPYEREDHEPDMMSGGTGDRKLSITGHSVGSADD 253
QL + ++ G D +Q + +RE E D + T + + + D+
Sbjct: 373 QLQEAQQPLGVDGNSGLQLFSNSDAIDTVDRESSEIDNVGRKTRRQPTGLINQELIKEDE 432
Query: 254 GELDNYDLDPSNFNEDGSIIGKYGA 328
G D+ D++ ++ NED GK GA
Sbjct: 433 GAFDDSDVNSADENEDVDFTGKIGA 457
>sp|Q810U3|NFASC_MOUSE Neurofascin precursor
Length = 1240
Score = 31.2 bits (69), Expect = 2.4
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +2
Query: 56 YCMRNKGETYQLDKIERQHGYDPEKEVQEEMFKPYEREDHEPDMMSGGTGDRKLSITGHS 235
+ R++G Y + + ++ PE +E+ Y ED++P S + D +
Sbjct: 1130 FIKRSRGGKYPVRE-KKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQ--- 1185
Query: 236 VGSADDGELDNYDLDPSNFNEDGSIIGKY 322
+DD +D + FNEDGS IG+Y
Sbjct: 1186 --ESDDSLVDYGEGGEGQFNEDGSFIGQY 1212
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,184,352
Number of Sequences: 369166
Number of extensions: 1537154
Number of successful extensions: 4146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4143
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)