Planaria EST Database

DrC_00222

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00222
         (1696 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54823|DDX6_MOUSE  Probable ATP-dependent RNA helicase DD...   380   e-105
sp|P54824|DDX6_XENLA  Probable ATP-dependent RNA helicase DD...   380   e-105
sp|P26196|DDX6_HUMAN  Probable ATP-dependent RNA helicase DD...   379   e-104
sp|P23128|ME31_DROME  Putative ATP-dependent RNA helicase me...   373   e-103
sp|P39517|DHH1_YEAST  Putative ATP-dependent RNA helicase DHH1    342   1e-93
sp|Q09181|STE13_SCHPO  Putative ATP-dependent RNA helicase s...   334   4e-91
sp|P27639|IF4A_CAEEL  Eukaryotic initiation factor 4A (eIF4A...   188   5e-47
sp|O02494|IF4A_CRYPV  Eukaryotic initiation factor 4A (eIF4A...   187   6e-47
sp|P47943|IF4A_SCHPO  Eukaryotic initiation factor 4A (eIF4A...   187   8e-47
sp|Q25225|IF4A_LEIBR  Probable eukaryotic initiation factor ...   186   1e-46

>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 (DEAD-box protein 6)
           (ATP-dependent RNA helicase p54) (Oncogene RCK homolog)
          Length = 483

 Score =  380 bits (976), Expect = e-105
 Identities = 184/248 (74%), Positives = 215/248 (86%)
 Frame = +3

Query: 15  ARGNFCKILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRD 194
           A+ +  +++V+DEADKLLS DF ++++ II  LP  RQI+LYSATFP SVQ+F+  H++ 
Sbjct: 235 AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQK 294

Query: 195 PYEINLMDELTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKI 374
           PYEINLM+ELTLKG++QYYAYV ERQKVHCLNTLFSRLQINQSIIFCN++QRVELLAKKI
Sbjct: 295 PYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKI 354

Query: 375 TDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKY 554
           + LGYSC+YIHAKM Q +RNRVFH+FRNG CRNLVCTDLFTRGIDI +VNVVINFDFPK 
Sbjct: 355 SQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL 414

Query: 555 AETYLHRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYVAEYQ 734
           AETYLHRIGRSGR+GHLG+A+NLITYDDRF LK+IE QL TEIK IP  IDK LYVAEY 
Sbjct: 415 AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474

Query: 735 NENELDTR 758
           +E   D +
Sbjct: 475 SEPAEDEK 482

>sp|P54824|DDX6_XENLA Probable ATP-dependent RNA helicase DDX6 (DEAD-box protein 6)
           (ATP-dependent RNA helicase p54) (Xp54)
          Length = 481

 Score =  380 bits (976), Expect = e-105
 Identities = 184/246 (74%), Positives = 215/246 (87%)
 Frame = +3

Query: 15  ARGNFCKILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRD 194
           A+ +  +++V+DEADKLLS DF ++++ II  LP  RQI+LYSATFP SVQ+F+  H++ 
Sbjct: 234 AKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILLYSATFPLSVQKFMTLHLQK 293

Query: 195 PYEINLMDELTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKI 374
           PYEINLM+ELTLKG++QYYAYV ERQKVHCLNTLFSRLQINQSIIFCN++QRVELLAKKI
Sbjct: 294 PYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKI 353

Query: 375 TDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKY 554
           + LGYSC+YIHAKM Q +RNRVFH+FRNG CRNLVCTDLFTRGIDI +VNVVINFDFPK 
Sbjct: 354 SQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL 413

Query: 555 AETYLHRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYVAEYQ 734
           AETYLHRIGRSGR+GHLG+A+NLITYDDRF LK+IE QL TEIK IP  IDK LYVAEY 
Sbjct: 414 AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKNLYVAEYH 473

Query: 735 NENELD 752
           +E+  D
Sbjct: 474 SESGED 479

>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 (DEAD-box protein 6)
           (ATP-dependent RNA helicase p54) (Oncogene RCK)
          Length = 483

 Score =  379 bits (974), Expect = e-104
 Identities = 183/242 (75%), Positives = 212/242 (87%)
 Frame = +3

Query: 15  ARGNFCKILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRD 194
           A+ +  +++V+DEADKLLS DF ++++ II  LP  RQI+LYSATFP SVQ+F+  H+  
Sbjct: 235 AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEK 294

Query: 195 PYEINLMDELTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKI 374
           PYEINLM+ELTLKG++QYYAYV ERQKVHCLNTLFSRLQINQSIIFCN++QRVELLAKKI
Sbjct: 295 PYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKI 354

Query: 375 TDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKY 554
           + LGYSC+YIHAKM Q +RNRVFH+FRNG CRNLVCTDLFTRGIDI +VNVVINFDFPK 
Sbjct: 355 SQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL 414

Query: 555 AETYLHRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYVAEYQ 734
           AETYLHRIGRSGR+GHLG+A+NLITYDDRF LK+IE QL TEIK IP  IDK LYVAEY 
Sbjct: 415 AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474

Query: 735 NE 740
           +E
Sbjct: 475 SE 476

>sp|P23128|ME31_DROME Putative ATP-dependent RNA helicase me31b (Maternal expression at
           31B)
          Length = 459

 Score =  373 bits (958), Expect = e-103
 Identities = 175/232 (75%), Positives = 207/232 (89%)
 Frame = +3

Query: 30  CKILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEIN 209
           C+ILV+DEADKLLS DF+ ++D++I KLP   QI+L+SATFP +V+ F+EKH+R+PYEIN
Sbjct: 201 CRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEIN 260

Query: 210 LMDELTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLGY 389
           LM+ELTLKG++QYYA+VQERQKVHCLNTLFS+LQINQSIIFCN+ QRVELLAKKIT+LGY
Sbjct: 261 LMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGY 320

Query: 390 SCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETYL 569
            CYYIHAKM Q +RNRVFH+FR G CRNLVC+DLFTRGID+ +VNVVINFDFP+ AETYL
Sbjct: 321 CCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYL 380

Query: 570 HRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYVA 725
           HRIGRSGR+GHLG+A+NLITY+DRF L  IE +L TEIK IPK ID  LYVA
Sbjct: 381 HRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPKVIDPALYVA 432

>sp|P39517|DHH1_YEAST Putative ATP-dependent RNA helicase DHH1
          Length = 506

 Score =  342 bits (878), Expect = 1e-93
 Identities = 163/233 (69%), Positives = 196/233 (84%)
 Frame = +3

Query: 30  CKILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEIN 209
           C + ++DEADK+LS DF+ +I+ I+S LP   Q +L+SATFP +V++F+ KH+  PYEIN
Sbjct: 189 CSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 248

Query: 210 LMDELTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLGY 389
           LM+ELTLKGI+QYYA+V+ERQK+HCLNTLFS+LQINQ+IIFCN+  RVELLAKKITDLGY
Sbjct: 249 LMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGY 308

Query: 390 SCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETYL 569
           SCYY HA+M Q  RN+VFHEFR G  R LVC+DL TRGIDI +VNVVINFDFPK AETYL
Sbjct: 309 SCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 368

Query: 570 HRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYVAE 728
           HRIGRSGR+GHLG+A+NLI ++DRF L  IE +L TEI AIP  IDK LYVAE
Sbjct: 369 HRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAE 421

>sp|Q09181|STE13_SCHPO Putative ATP-dependent RNA helicase ste13
          Length = 485

 Score =  334 bits (857), Expect = 4e-91
 Identities = 165/252 (65%), Positives = 195/252 (77%), Gaps = 3/252 (1%)
 Frame = +3

Query: 30  CKILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEIN 209
           C   V+DEADKLLS +F  +I+ ++S  P  RQI LYSATFP  V+ F++KH+  PYEIN
Sbjct: 187 CTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEIN 246

Query: 210 LMDELTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLGY 389
           LMDELTL+G++QYYA+V E QKVHCLNTLFS+LQINQSIIFCN+  RVELLAKKIT+LGY
Sbjct: 247 LMDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGY 306

Query: 390 SCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETYL 569
           SC+Y HAKM Q +RNRVFH FRNG CRNLVC+DL TRGIDI +VNVVINFDFPK AETYL
Sbjct: 307 SCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYL 366

Query: 570 HRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYV---AEYQNE 740
           HRIGRSGR+GH G+A++ I++ DRF L  IE +L TEI+ IP  ID  LYV    +YQ  
Sbjct: 367 HRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSLYVFPNGDYQIP 426

Query: 741 NELDTRIRDALA 776
             L       LA
Sbjct: 427 RPLTASADQVLA 438

>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 402

 Score =  188 bits (477), Expect = 5e-47
 Identities = 94/226 (41%), Positives = 147/226 (65%), Gaps = 2/226 (0%)
 Frame = +3

Query: 33  KILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEINL 212
           K+ V+DEAD++LS  F++ I  +   +P   Q++L SAT P  V     + MR+P  I +
Sbjct: 173 KMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILV 232

Query: 213 M-DELTLKGISQYYAYVQERQ-KVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLG 386
             DELTL+GI Q+Y  VQ+ + K  CL  L++ + + Q++IFCNT ++V+ L +K+T+  
Sbjct: 233 KKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQ 292

Query: 387 YSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETY 566
           ++   +H  M+Q  R+ +  EFR+G+ R L+ TD+  RGID+  V++VIN+D P   E Y
Sbjct: 293 FTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENY 352

Query: 567 LHRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYI 704
           +HRIGRSGR+G  GVA+N +T +D   LK IE+   T+I+ +P+ I
Sbjct: 353 IHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESI 398

>sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 405

 Score =  187 bits (476), Expect = 6e-47
 Identities = 96/223 (43%), Positives = 145/223 (65%), Gaps = 2/223 (0%)
 Frame = +3

Query: 33  KILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEINL 212
           K+ ++DEAD++LS  F+  I  I  KLP   Q+ L+SAT P  +     + MRDP  I +
Sbjct: 175 KLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILV 234

Query: 213 -MDELTLKGISQYYAYVQERQ-KVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLG 386
             +ELTL+GI Q+Y  V++ + K+  L  L+  L I Q+II+CNT +RV+ L K++ +  
Sbjct: 235 KQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQMRERD 294

Query: 387 YSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETY 566
           ++C  +H  M+Q  R  +  +FR+G+ R L+ TDL  RGID+  V++VIN+D P   ETY
Sbjct: 295 FTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETY 354

Query: 567 LHRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIP 695
           +HRIGRSGR+G  GV++N +T DD   L++IE   NT+I+ +P
Sbjct: 355 IHRIGRSGRFGKKGVSINFVTDDDIVCLRDIERHYNTQIEEMP 397

>sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 392

 Score =  187 bits (475), Expect = 8e-47
 Identities = 95/226 (42%), Positives = 145/226 (64%), Gaps = 2/226 (0%)
 Frame = +3

Query: 33  KILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEINL 212
           ++ V+DEAD++LS  F++ I  I   LP   Q++L SAT PQ V +   K MRDP  I +
Sbjct: 163 QMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILV 222

Query: 213 M-DELTLKGISQYYAYVQERQ-KVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLG 386
             DELTL+GI Q+Y  V++ + K+  L  L+  + + Q++IFCNT ++V+ L +++T+  
Sbjct: 223 KKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERD 282

Query: 387 YSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETY 566
           ++   +H  M+Q  R+ + HEFR G+ R L+ TDL  RGID+  V++VIN+D P   E Y
Sbjct: 283 FTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENY 342

Query: 567 LHRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYI 704
           +HRIGR GR+G  GV++N +T DD   ++ IE   NT I+ +P  I
Sbjct: 343 IHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNI 388

>sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
          Length = 403

 Score =  186 bits (473), Expect = 1e-46
 Identities = 102/233 (43%), Positives = 145/233 (62%), Gaps = 1/233 (0%)
 Frame = +3

Query: 33  KILVIDEADKLLSADFEEVIDYIISKLPTQRQIMLYSATFPQSVQQFLEKHMRDPYEINL 212
           ++LV+DEAD++LS  F + I  I   LP   Q+ L+SAT P+ V +  +K MRDP  I +
Sbjct: 173 RVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVALFSATMPEEVLELTKKFMRDPVRILV 232

Query: 213 MDE-LTLKGISQYYAYVQERQKVHCLNTLFSRLQINQSIIFCNTAQRVELLAKKITDLGY 389
             E LTL+GI Q++  V+E  K+  L  L+  + I QS+IF NT ++V+ +A+K+    +
Sbjct: 233 KRESLTLEGIKQFFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNH 292

Query: 390 SCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNVVINFDFPKYAETYL 569
           +   +HA+M +  R RV + FR+G+ R LV TDL  RGID+  VN+VINFD P   E YL
Sbjct: 293 TVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYL 352

Query: 570 HRIGRSGRYGHLGVAVNLITYDDRFALKNIETQLNTEIKAIPKYIDKRLYVAE 728
           HRIGR GRYG  GVA+N +T  D   L  IE   +T+I  +P  +D   Y+ E
Sbjct: 353 HRIGRGGRYGVKGVAINFVTEKDVELLHEIEGHYHTQIDELP--VDFAAYLGE 403

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,354,783
Number of Sequences: 369166
Number of extensions: 3572360
Number of successful extensions: 8754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8453
length of database: 68,354,980
effective HSP length: 116
effective length of database: 46,925,720
effective search space used: 21022722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00222

  1. Dr_sW_006_I13
  2. Dr_sW_017_P03