Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_P03
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52472|UL95_HHV7J Protein U67 31 4.1
sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease precursor (... 30 7.0
sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease precursor (... 30 7.0
sp|Q05319|STUB_DROME Serine proteinase stubble (Stubble-stu... 30 7.0
>sp|P52472|UL95_HHV7J Protein U67
Length = 346
Score = 31.2 bits (69), Expect = 4.1
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -3
Query: 744 NAIYHKNLIPSTCDKLHSKSHFQ*SSRLELLMSSFNQ*IPIFSTTKF 604
N + N++PS K ++++ + LE L SSFN +P+ S+ K+
Sbjct: 54 NFLLVTNVVPSETSKATTEANLNIDAALEKLASSFNTAVPVKSSKKY 100
>sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease precursor (IGA1 protease)
Length = 1545
Score = 30.4 bits (67), Expect = 7.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 ENTNEITAPVTNSTTVMTTNA--KSIQNIKPVTTQSARNDYNVYSSQRP 141
E ++ + PVT STTV T N+ ++ +N P TTQ N SS +P
Sbjct: 1178 ETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT---VNSESSNKP 1223
>sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease precursor (IGA1 protease)
Length = 1541
Score = 30.4 bits (67), Expect = 7.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 ENTNEITAPVTNSTTVMTTNA--KSIQNIKPVTTQSARNDYNVYSSQRP 141
E ++ + PVT STTV T N+ ++ +N P TTQ N SS +P
Sbjct: 1174 ETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT---VNSESSNKP 1219
>sp|Q05319|STUB_DROME Serine proteinase stubble (Stubble-stubbloid protein) [Contains:
Serine proteinase stubble non-catalytic chain; Serine
proteinase stubble catalytic chain]
Length = 787
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +1
Query: 7 TNEITAP------VTNSTTVMTTNAKSIQNIKPVTTQSARNDYNVYSSQRP 141
TN+ T P T+S++ TT++K+ +P+++ S+ + V SSQRP
Sbjct: 438 TNKPTRPYQRPTTATSSSSTSTTSSKTPTTTRPISSSSSSSSGIVTSSQRP 488
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,325,284
Number of Sequences: 369166
Number of extensions: 1586721
Number of successful extensions: 3103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3075
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)