Planaria EST Database

DrC_00221

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00221
         (1262 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6F0Z2|LEPA_MESFL  GTP-binding protein lepA                     33   2.3  
sp|Q9VTK2|POMT1_DROME  Protein O-mannosyltransferase 1 (Doli...    31   8.7  
sp|P06173|RPOB_SALTY  DNA-directed RNA polymerase beta chain...    31   8.7  

>sp|Q6F0Z2|LEPA_MESFL GTP-binding protein lepA
          Length = 600

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 326 EDRVLTEMNVERKRALEPSKNDIALWYKLKNDQENPF 436
           ++++L  M++ER+R +    N + L+YK K+ QE  F
Sbjct: 39  QEQLLDSMDIERERGITIKLNSVQLYYKAKDGQEYTF 75

>sp|Q9VTK2|POMT1_DROME Protein O-mannosyltransferase 1
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           1) (dPOMT1) (Rotated abdomen protein)
          Length = 886

 Score = 30.8 bits (68), Expect = 8.7
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = -1

Query: 428 SPDHFSICTTRQYHSWTVLMLAFSQHSFQSTHDPHLLYK*LESLNSEQHLFLYH*HYFSW 249
           S   F++       SWT+ +LAF    ++    PH+++  L              HY  +
Sbjct: 163 SSQPFTVNLRIDLFSWTLFLLAFGTRFYKLATPPHIVFDEL--------------HYGKY 208

Query: 248 VSKYQMLLLQFDQ 210
           +S Y   +  FDQ
Sbjct: 209 ISMYMRNIFFFDQ 221

>sp|P06173|RPOB_SALTY DNA-directed RNA polymerase beta chain (RNAP beta subunit)
            (Transcriptase beta chain) (RNA polymerase beta subunit)
          Length = 1342

 Score = 30.8 bits (68), Expect = 8.7
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
 Frame = +2

Query: 278  KDVAQNLATRATCTINEDRVLTEMNVER-KRALEPSKNDIALWYKLKNDQENPFKSDLFI 454
            KD +  +    + T+ + +V T   VE+ KRALE  +  +    K  +++    ++ LF 
Sbjct: 914  KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973

Query: 455  RV-LYLIGSWAGGEGXXXXXXXXIHDQFLTEEQIRENQLKEQRVNVERLKHELASGDIQY 631
            R+   L+ S    E           +  LT+E+ ++NQL++     + LKHE    + + 
Sbjct: 974  RIRAVLVSSGVEAEKLDKLPRDRWLELGLTDEE-KQNQLEQLAEQYDELKHEF---EKKL 1029

Query: 632  QSKSGTVTPVELIYQSIPNLVK 697
            ++K   +T  + +   +  +VK
Sbjct: 1030 EAKRRKITQGDDLAPGVLKIVK 1051

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,759,221
Number of Sequences: 369166
Number of extensions: 2495749
Number of successful extensions: 5521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5514
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14576336975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00221

  1. Dr_sW_006_H19
  2. Dr_sW_002_J07