Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J07
(706 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79114|MYO10_BOVIN Myosin-10 (Myosin X) 30 6.2
sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X) 30 6.2
sp|O64459|UGPA_PYRPY UTP--glucose-1-phosphate uridylyltrans... 30 6.2
>sp|P79114|MYO10_BOVIN Myosin-10 (Myosin X)
Length = 2052
Score = 30.0 bits (66), Expect = 6.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 37 RLKHELASGDIQYQSKSGTVTPVELIYQSIPNFVKRNSLSSSMLEQVFKSN 189
+L +E Q+ + T P++ Q + +K N L+S ++EQ++K N
Sbjct: 1474 KLLNEATRWSSAIQNVTDTKAPIDTPTQQLIQDIKENCLNSDVVEQIYKRN 1524
>sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X)
Length = 2058
Score = 30.0 bits (66), Expect = 6.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 37 RLKHELASGDIQYQSKSGTVTPVELIYQSIPNFVKRNSLSSSMLEQVFKSN 189
+L +E Q+ + T P++ Q + +K N L+S ++EQ++K N
Sbjct: 1480 KLLNEATRWSSAIQNVTDTKAPIDTPTQQLIQDIKENCLNSDVVEQIYKRN 1530
>sp|O64459|UGPA_PYRPY UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose
pyrophosphorylase) (UDPGP) (UGPase)
Length = 471
Score = 30.0 bits (66), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 628 NTDSIKCHLCSHWNINDNLNNSKILIINMYVNTETCQHIK 509
N D +K + S I++N N I +++ YV+ E QH++
Sbjct: 8 NVDKLKSDVASLSQISENEKNGFINLVSRYVSGEEAQHVE 47
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,168,800
Number of Sequences: 369166
Number of extensions: 1208947
Number of successful extensions: 2503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2499
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)