DrC_00220
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00220 (631 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q57951|Y531_METJA Hypothetical protein MJ0531 62 9e-10 sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor 57 5e-08 sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101 52 1e-06 sp|O07552|NHAX_BACSU Stress response protein nhaX 51 2e-06 sp|P74897|YQA3_THEAQ Hypothetical 14.6 kDa protein in QAH/O... 46 7e-05 sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromo... 46 9e-05 sp|P64995|YN19_MYCTU Hypothetical protein Rv2319c/MT2382 >g... 44 3e-04 sp|P0A5F8|Y2019_MYCBO Hypothetical protein Mb2019 >gi|61250... 44 4e-04 sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388 42 0.001 sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c >gi|54042... 39 0.008
>sp|Q57951|Y531_METJA Hypothetical protein MJ0531 Length = 170 Score = 62.4 bits (150), Expect = 9e-10 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 1/147 (0%) Frame = +2 Query: 56 RRILIPVDGSDYSTKAFEWYAENVMKLDDTVVF-IHVIDPPVLNSLNLSVGMNIPVDDWA 232 ++I+IP DGSD S +A + +A N+ K D V+ I+V+D L + + Sbjct: 27 KKIVIPTDGSDVSLEAAK-HAINIAKEFDAEVYAIYVVDVSPFVGLPAEGSWELISELLK 85 Query: 233 SAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRG 412 Q + K +K+ E V+ + L+ P IV+F ++K D++V+G G Sbjct: 86 EEGQEALKKVKKMAEEWGVKIHTEMLEGV--------PANEIVEFAEKKKADLIVMGTTG 137 Query: 413 LGKIKRCLLGSVSDYVLHNSSVPVTVV 493 ++R LLGSV++ V+ N+ PV VV Sbjct: 138 KTGLERILLGSVAERVIKNAHCPVLVV 164
>sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor Length = 148 Score = 56.6 bits (135), Expect = 5e-08 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 1/149 (0%) Frame = +2 Query: 50 MSRRILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDW 229 M ++L+ +DGSD S KA + + + +HV V+ + +L+ + +P + + Sbjct: 1 MFNKMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVP-EHF 59 Query: 230 ASAIQSGILKAE-KINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGN 406 I++ + K KI + + K ++ E ++ P I+ +EK + ++V+G+ Sbjct: 60 IDEIRNEVKKEGLKILENAKEKAAEKGVQAETI-YANGEPAHEILNHAKEKGVSLIVVGS 118 Query: 407 RGLGKIKRCLLGSVSDYVLHNSSVPVTVV 493 RG+ +K +LGSVS V S+ PV +V Sbjct: 119 RGISGLKEMMLGSVSHKVSQLSTCPVLIV 147
>sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101 Length = 108 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Frame = +2 Query: 164 IDPPVLNSLNLSVGMNIPVDDWASAIQSGILKAEKINNE---LRVRCQLKKLKDEFYSIS 334 I P V N L + V W + Q G+ EK + L + CQ +++ Sbjct: 4 IYPAVGNELTMEVWQQ----QWQTFEQEGLDTLEKRRQQALALDIECQAEQIL------- 52 Query: 335 HNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVVP 496 +PG+ I Q ++ N D++V+G+RG + LLGSV +YV H++ V VVP Sbjct: 53 -GSPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVP 105
>sp|O07552|NHAX_BACSU Stress response protein nhaX Length = 166 Score = 51.2 bits (121), Expect = 2e-06 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Frame = +2 Query: 59 RILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIH---------VIDPP--VLNSLNLSVG 205 RI++ DGS+ S KA + ++ + H VIDPP + +S G Sbjct: 6 RIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGG 65 Query: 206 MNIPVDDWASAIQSGIL-----KAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFT 370 M D S + S + E++ E R+ ++ D I +P E I++ Sbjct: 66 MTSVPDPLISDVTSPEPMIYEDRTEEVIAEARMMLN-EQQADGDIDILEGDPAESIIEHA 124 Query: 371 QEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 493 + DM+V G+R ++K+ + GSVS+ + S +PV +V Sbjct: 125 NRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIV 165
>sp|P74897|YQA3_THEAQ Hypothetical 14.6 kDa protein in QAH/OAS sulfhydrylase 3'region Length = 137 Score = 46.2 bits (108), Expect = 7e-05 Identities = 37/148 (25%), Positives = 64/148 (43%) Frame = +2 Query: 50 MSRRILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDW 229 M + IL+ DGSD++ +A ++ +H +P V + + Sbjct: 1 MFKTILLAYDGSDHAKRAAAVAKAEAQAHGARLLVVHAYEP---------VPDYLGEPFF 51 Query: 230 ASAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNR 409 A++ + +AEK+ E L + E + P E I+Q + D++V+G R Sbjct: 52 EEALKRRLERAEKVRAEAMA---LTGVpreDALLLQGRPAEAILQAAIGEKADLIVMGTR 108 Query: 410 GLGKIKRCLLGSVSDYVLHNSSVPVTVV 493 GLG + LGS S V+ + PV +V Sbjct: 109 GLGAVGSLFLGSQSQKVVAEAPCPVLLV 136
>sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromosome I Length = 601 Score = 45.8 bits (107), Expect = 9e-05 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 1/142 (0%) Frame = +2 Query: 68 IPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASAIQS 247 + +D S S A EW +++ DT++ + VI+ ++ + M + I Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVKDRMESEQLETLEKITK 494 Query: 248 GILKA-EKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKI 424 ILK K E+ V ++ I H I++ +VV+G+RG + Sbjct: 495 YILKLLSKTVLEVEVNIEV---------IHHEKAKHLIIEMIDYIEPSLVVMGSRGRSHL 545 Query: 425 KRCLLGSVSDYVLHNSSVPVTV 490 K LLGS S+Y+++ SSVPV V Sbjct: 546 KGVLLGSFSNYLVNKSSVPVMV 567
>sp|P64995|YN19_MYCTU Hypothetical protein Rv2319c/MT2382 sp|P64996|YN46_MYCBO Hypothetical protein Mb2346c Length = 292 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Frame = +2 Query: 299 LKKLKD----EFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLH 466 L++L D ++ +H + G++ +E +++V+G+ G+ R L+GS +D +LH Sbjct: 72 LRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLH 131 Query: 467 NSSVPVTVVP 496 +S VPV + P Sbjct: 132 SSPVPVAITP 141
Score = 30.8 bits (68), Expect = 3.0
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +2
Query: 230 ASAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNR 409
AS +++ +A ++ +LR+ + + D + N + ++ +++ +G
Sbjct: 205 ASVLEAWAAQARELLEKLRINGVVSE--DVVLQVVTGNGWAQALDAADWQDGEILALGTS 262
Query: 410 GLGKIKRCLLGSVSDYVLHNSSVPVTVVP 496
G + R LGS S ++ S VPV V+P
Sbjct: 263 PFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
>sp|P0A5F8|Y2019_MYCBO Hypothetical protein Mb2019 sp|P0A5F7|Y1996_MYCTU Hypothetical protein Rv1996/MT2052 Length = 317 Score = 43.5 bits (101), Expect = 4e-04 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%) Frame = +2 Query: 62 ILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWA--- 232 I++ VDGS S A EW A + + + + V+ PPV+ + + WA Sbjct: 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVV-PPVITA----------PEGWAFEY 58 Query: 233 SAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEG-IVQFTQE----------- 376 S Q K E + + V Q ++ ++ + ++ G Q T E Sbjct: 59 SRFQEA-QKREIVEHSYLV-AQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLA 116 Query: 377 ---KNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVVP 496 + + MVV+G RG G + LLGSVS ++ ++ PV V+P Sbjct: 117 NISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIP 159
>sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388 Length = 154 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +2 Query: 323 YSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 493 + + PG I + + D+VV+G RGL + LGSVS YV+H+ V +V Sbjct: 96 WDVKVGEPGRWIRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIV 152
>sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c sp|P64921|YK05_MYCTU Hypothetical protein Rv2005c/MT2061 Length = 295 Score = 39.3 bits (90), Expect = 0.008 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Frame = +2 Query: 62 ILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLN--SLNLSVGMNIPVDDWAS 235 +++ VDGS S A W A + + + +HV++ V + + +D Sbjct: 10 VVVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETWGVWQEDEGR 69 Query: 236 AIQSGILKAEK----INNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIG 403 I + +K K + +L V+ +L + P +V+ + E +MVV+G Sbjct: 70 QIVANAVKLAKEAVGADRKLSVKSELV----------FSTPVPTMVEISNEA--EMVVLG 117 Query: 404 NRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 493 + G G + R LLGSVS ++ + PV V+ Sbjct: 118 SSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 38.1 bits (87), Expect = 0.019
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 338 NNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTV 490
+ P +VQ + + +VV+G+ G G + LLGSVS+ VLH + VPV V
Sbjct: 243 DRPARKLVQ--KSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIV 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,141,500
Number of Sequences: 369166
Number of extensions: 1091513
Number of successful extensions: 2677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
