Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J17
(563 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q57951|Y531_METJA Hypothetical protein MJ0531 59 6e-09
sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor 54 2e-07
sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101 52 1e-06
sp|O07552|NHAX_BACSU Stress response protein nhaX 48 2e-05
sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromo... 46 7e-05
sp|P64995|YN19_MYCTU Hypothetical protein Rv2319c/MT2382 >g... 44 2e-04
sp|P74897|YQA3_THEAQ Hypothetical 14.6 kDa protein in QAH/O... 43 5e-04
sp|P0A5F8|Y2019_MYCBO Hypothetical protein Mb2019 >gi|61250... 42 0.001
sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388 42 0.001
sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c >gi|54042... 38 0.015
>sp|Q57951|Y531_METJA Hypothetical protein MJ0531
Length = 170
Score = 59.3 bits (142), Expect = 6e-09
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Frame = +3
Query: 3 LIPVDGSDYSTKAFEWYAENVMKLDDTVVF-IHVIDPPVLNSLNLSVGMNIPVDDWASAI 179
+IP DGSD S +A + +A N+ K D V+ I+V+D L + +
Sbjct: 30 VIPTDGSDVSLEAAK-HAINIAKEFDAEVYAIYVVDVSPFVGLPAEGSWELISELLKEEG 88
Query: 180 QSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGK 359
Q + K +K+ E V+ + L+ P IV+F ++K D++V+G G
Sbjct: 89 QEALKKVKKMAEEWGVKIHTEMLEGV--------PANEIVEFAEKKKADLIVMGTTGKTG 140
Query: 360 IKRCLLGSVSDYVLHNSSVPVTVV 431
++R LLGSV++ V+ N+ PV VV
Sbjct: 141 LERILLGSVAERVIKNAHCPVLVV 164
>sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor
Length = 148
Score = 54.3 bits (129), Expect = 2e-07
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Frame = +3
Query: 3 LIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASAIQ 182
L+ +DGSD S KA + + + +HV V+ + +L+ + +P + + I+
Sbjct: 6 LVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVP-EHFIDEIR 64
Query: 183 SGILKAE-KINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGK 359
+ + K KI + + K ++ E ++ P I+ +EK + ++V+G+RG+
Sbjct: 65 NEVKKEGLKILENAKEKAAEKGVQAETI-YANGEPAHEILNHAKEKGVSLIVVGSRGISG 123
Query: 360 IKRCLLGSVSDYVLHNSSVPVTVV 431
+K +LGSVS V S+ PV +V
Sbjct: 124 LKEMMLGSVSHKVSQLSTCPVLIV 147
>sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101
Length = 108
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +3
Query: 102 IDPPVLNSLNLSVGMNIPVDDWASAIQSGILKAEKINNE---LRVRCQLKKLKDEFYSIS 272
I P V N L + V W + Q G+ EK + L + CQ +++
Sbjct: 4 IYPAVGNELTMEVWQQ----QWQTFEQEGLDTLEKRRQQALALDIECQAEQIL------- 52
Query: 273 HNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVVP 434
+PG+ I Q ++ N D++V+G+RG + LLGSV +YV H++ V VVP
Sbjct: 53 -GSPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVP 105
>sp|O07552|NHAX_BACSU Stress response protein nhaX
Length = 166
Score = 47.8 bits (112), Expect = 2e-05
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Frame = +3
Query: 3 LIPVDGSDYSTKAFEWYAENVMKLDDTVVFIH---------VIDPP--VLNSLNLSVGMN 149
++ DGS+ S KA + ++ + H VIDPP + +S GM
Sbjct: 8 IVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGGMT 67
Query: 150 IPVDDWASAIQSGIL-----KAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQE 314
D S + S + E++ E R+ ++ D I +P E I++
Sbjct: 68 SVPDPLISDVTSPEPMIYEDRTEEVIAEARMMLN-EQQADGDIDILEGDPAESIIEHANR 126
Query: 315 KNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 431
+ DM+V G+R ++K+ + GSVS+ + S +PV +V
Sbjct: 127 ISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIV 165
>sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromosome I
Length = 601
Score = 45.8 bits (107), Expect = 7e-05
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +3
Query: 6 IPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASAIQS 185
+ +D S S A EW +++ DT++ + VI+ ++ + M + I
Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVKDRMESEQLETLEKITK 494
Query: 186 GILKA-EKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKI 362
ILK K E+ V ++ I H I++ +VV+G+RG +
Sbjct: 495 YILKLLSKTVLEVEVNIEV---------IHHEKAKHLIIEMIDYIEPSLVVMGSRGRSHL 545
Query: 363 KRCLLGSVSDYVLHNSSVPVTV 428
K LLGS S+Y+++ SSVPV V
Sbjct: 546 KGVLLGSFSNYLVNKSSVPVMV 567
>sp|P64995|YN19_MYCTU Hypothetical protein Rv2319c/MT2382
sp|P64996|YN46_MYCBO Hypothetical protein Mb2346c
Length = 292
Score = 44.3 bits (103), Expect = 2e-04
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +3
Query: 237 LKKLKD----EFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLH 404
L++L D ++ +H + G++ +E +++V+G+ G+ R L+GS +D +LH
Sbjct: 72 LRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLH 131
Query: 405 NSSVPVTVVP 434
+S VPV + P
Sbjct: 132 SSPVPVAITP 141
Score = 30.8 bits (68), Expect = 2.4
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +3
Query: 168 ASAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNR 347
AS +++ +A ++ +LR+ + + D + N + ++ +++ +G
Sbjct: 205 ASVLEAWAAQARELLEKLRINGVVSE--DVVLQVVTGNGWAQALDAADWQDGEILALGTS 262
Query: 348 GLGKIKRCLLGSVSDYVLHNSSVPVTVVP 434
G + R LGS S ++ S VPV V+P
Sbjct: 263 PFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
>sp|P74897|YQA3_THEAQ Hypothetical 14.6 kDa protein in QAH/OAS sulfhydrylase 3'region
Length = 137
Score = 43.1 bits (100), Expect = 5e-04
Identities = 35/143 (24%), Positives = 61/143 (42%)
Frame = +3
Query: 3 LIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASAIQ 182
L+ DGSD++ +A ++ +H +P V + + A++
Sbjct: 6 LLAYDGSDHAKRAAAVAKAEAQAHGARLLVVHAYEP---------VPDYLGEPFFEEALK 56
Query: 183 SGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKI 362
+ +AEK+ E L + E + P E I+Q + D++V+G RGLG +
Sbjct: 57 RRLERAEKVRAEAMA---LTGVpreDALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAV 113
Query: 363 KRCLLGSVSDYVLHNSSVPVTVV 431
LGS S V+ + PV +V
Sbjct: 114 GSLFLGSQSQKVVAEAPCPVLLV 136
>sp|P0A5F8|Y2019_MYCBO Hypothetical protein Mb2019
sp|P0A5F7|Y1996_MYCTU Hypothetical protein Rv1996/MT2052
Length = 317
Score = 42.0 bits (97), Expect = 0.001
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Frame = +3
Query: 3 LIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWA---S 173
++ VDGS S A EW A + + + + V+ PPV+ + + WA S
Sbjct: 11 VVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVV-PPVITA----------PEGWAFEYS 59
Query: 174 AIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEG-IVQFTQE------------ 314
Q K E + + V Q ++ ++ + ++ G Q T E
Sbjct: 60 RFQEA-QKREIVEHSYLV-AQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLAN 117
Query: 315 --KNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVVP 434
+ + MVV+G RG G + LLGSVS ++ ++ PV V+P
Sbjct: 118 ISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIP 159
>sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388
Length = 154
Score = 42.0 bits (97), Expect = 0.001
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 261 YSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 431
+ + PG I + + D+VV+G RGL + LGSVS YV+H+ V +V
Sbjct: 96 WDVKVGEPGRWIRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIV 152
>sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c
sp|P64921|YK05_MYCTU Hypothetical protein Rv2005c/MT2061
Length = 295
Score = 38.1 bits (87), Expect = 0.015
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Frame = +3
Query: 3 LIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLN--SLNLSVGMNIPVDDWASA 176
++ VDGS S A W A + + + +HV++ V + + +D
Sbjct: 11 VVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETWGVWQEDEGRQ 70
Query: 177 IQSGILKAEK----INNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGN 344
I + +K K + +L V+ +L + P +V+ + E +MVV+G+
Sbjct: 71 IVANAVKLAKEAVGADRKLSVKSELV----------FSTPVPTMVEISNEA--EMVVLGS 118
Query: 345 RGLGKIKRCLLGSVSDYVLHNSSVPVTVV 431
G G + R LLGSVS ++ + PV V+
Sbjct: 119 SGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 38.1 bits (87), Expect = 0.015
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 276 NNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTV 428
+ P +VQ + + +VV+G+ G G + LLGSVS+ VLH + VPV V
Sbjct: 243 DRPARKLVQ--KSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIV 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,523,162
Number of Sequences: 369166
Number of extensions: 977570
Number of successful extensions: 2427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2421
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)