Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N05
(574 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q57951|Y531_METJA Hypothetical protein MJ0531 62 1e-09
sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor 55 1e-07
sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101 52 1e-06
sp|O07552|NHAX_BACSU Stress response protein nhaX 51 2e-06
sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromo... 46 8e-05
sp|P74897|YQA3_THEAQ Hypothetical 14.6 kDa protein in QAH/O... 45 2e-04
sp|P64995|YN19_MYCTU Hypothetical protein Rv2319c/MT2382 >g... 44 2e-04
sp|P0A5F8|Y2019_MYCBO Hypothetical protein Mb2019 >gi|61250... 44 4e-04
sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388 42 0.001
sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c >gi|54042... 39 0.007
>sp|Q57951|Y531_METJA Hypothetical protein MJ0531
Length = 170
Score = 61.6 bits (148), Expect = 1e-09
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 RILIPVDGSDYSTKAFEWYAENVMKLDDTVVF-IHVIDPPVLNSLNLSVGMNIPVDDWAS 178
+I+IP DGSD S +A + +A N+ K D V+ I+V+D L + +
Sbjct: 28 KIVIPTDGSDVSLEAAK-HAINIAKEFDAEVYAIYVVDVSPFVGLPAEGSWELISELLKE 86
Query: 179 AIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGL 358
Q + K +K+ E V+ + L+ P IV+F ++K D++V+G G
Sbjct: 87 EGQEALKKVKKMAEEWGVKIHTEMLEGV--------PANEIVEFAEKKKADLIVMGTTGK 138
Query: 359 GKIKRCLLGSVSDYVLHNSSVPVTVV 436
++R LLGSV++ V+ N+ PV VV
Sbjct: 139 TGLERILLGSVAERVIKNAHCPVLVV 164
>sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor
Length = 148
Score = 55.5 bits (132), Expect = 1e-07
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 RILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASA 181
++L+ +DGSD S KA + + + +HV V+ + +L+ + +P + +
Sbjct: 4 KMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVP-EHFIDE 62
Query: 182 IQSGILKAE-KINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGL 358
I++ + K KI + + K ++ E ++ P I+ +EK + ++V+G+RG+
Sbjct: 63 IRNEVKKEGLKILENAKEKAAEKGVQAETI-YANGEPAHEILNHAKEKGVSLIVVGSRGI 121
Query: 359 GKIKRCLLGSVSDYVLHNSSVPVTVV 436
+K +LGSVS V S+ PV +V
Sbjct: 122 SGLKEMMLGSVSHKVSQLSTCPVLIV 147
>sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101
Length = 108
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +2
Query: 107 IDPPVLNSLNLSVGMNIPVDDWASAIQSGILKAEKINNE---LRVRCQLKKLKDEFYSIS 277
I P V N L + V W + Q G+ EK + L + CQ +++
Sbjct: 4 IYPAVGNELTMEVWQQ----QWQTFEQEGLDTLEKRRQQALALDIECQAEQIL------- 52
Query: 278 HNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVVP 439
+PG+ I Q ++ N D++V+G+RG + LLGSV +YV H++ V VVP
Sbjct: 53 -GSPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVP 105
>sp|O07552|NHAX_BACSU Stress response protein nhaX
Length = 166
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Frame = +2
Query: 2 RILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIH---------VIDPP--VLNSLNLSVG 148
RI++ DGS+ S KA + ++ + H VIDPP + +S G
Sbjct: 6 RIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGG 65
Query: 149 MNIPVDDWASAIQSGIL-----KAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFT 313
M D S + S + E++ E R+ ++ D I +P E I++
Sbjct: 66 MTSVPDPLISDVTSPEPMIYEDRTEEVIAEARMMLN-EQQADGDIDILEGDPAESIIEHA 124
Query: 314 QEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 436
+ DM+V G+R ++K+ + GSVS+ + S +PV +V
Sbjct: 125 NRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIV 165
>sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromosome I
Length = 601
Score = 45.8 bits (107), Expect = 8e-05
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +2
Query: 11 IPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASAIQS 190
+ +D S S A EW +++ DT++ + VI+ ++ + M + I
Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVKDRMESEQLETLEKITK 494
Query: 191 GILKA-EKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKI 367
ILK K E+ V ++ I H I++ +VV+G+RG +
Sbjct: 495 YILKLLSKTVLEVEVNIEV---------IHHEKAKHLIIEMIDYIEPSLVVMGSRGRSHL 545
Query: 368 KRCLLGSVSDYVLHNSSVPVTV 433
K LLGS S+Y+++ SSVPV V
Sbjct: 546 KGVLLGSFSNYLVNKSSVPVMV 567
>sp|P74897|YQA3_THEAQ Hypothetical 14.6 kDa protein in QAH/OAS sulfhydrylase 3'region
Length = 137
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/144 (25%), Positives = 62/144 (43%)
Frame = +2
Query: 5 ILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWASAI 184
IL+ DGSD++ +A ++ +H +P V + + A+
Sbjct: 5 ILLAYDGSDHAKRAAAVAKAEAQAHGARLLVVHAYEP---------VPDYLGEPFFEEAL 55
Query: 185 QSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGK 364
+ + +AEK+ E L + E + P E I+Q + D++V+G RGLG
Sbjct: 56 KRRLERAEKVRAEAMA---LTGVpreDALLLQGRPAEAILQAAIGEKADLIVMGTRGLGA 112
Query: 365 IKRCLLGSVSDYVLHNSSVPVTVV 436
+ LGS S V+ + PV +V
Sbjct: 113 VGSLFLGSQSQKVVAEAPCPVLLV 136
>sp|P64995|YN19_MYCTU Hypothetical protein Rv2319c/MT2382
sp|P64996|YN46_MYCBO Hypothetical protein Mb2346c
Length = 292
Score = 44.3 bits (103), Expect = 2e-04
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 242 LKKLKD----EFYSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLH 409
L++L D ++ +H + G++ +E +++V+G+ G+ R L+GS +D +LH
Sbjct: 72 LRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLH 131
Query: 410 NSSVPVTVVP 439
+S VPV + P
Sbjct: 132 SSPVPVAITP 141
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +2
Query: 173 ASAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIGNR 352
AS +++ +A ++ +LR+ + + D + N + ++ +++ +G
Sbjct: 205 ASVLEAWAAQARELLEKLRINGVVSE--DVVLQVVTGNGWAQALDAADWQDGEILALGTS 262
Query: 353 GLGKIKRCLLGSVSDYVLHNSSVPVTVVP 439
G + R LGS S ++ S VPV V+P
Sbjct: 263 PFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
>sp|P0A5F8|Y2019_MYCBO Hypothetical protein Mb2019
sp|P0A5F7|Y1996_MYCTU Hypothetical protein Rv1996/MT2052
Length = 317
Score = 43.5 bits (101), Expect = 4e-04
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Frame = +2
Query: 5 ILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLNSLNLSVGMNIPVDDWA--- 175
I++ VDGS S A EW A + + + + V+ PPV+ + + WA
Sbjct: 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVV-PPVITA----------PEGWAFEY 58
Query: 176 SAIQSGILKAEKINNELRVRCQLKKLKDEFYSISHNNPGEG-IVQFTQE----------- 319
S Q K E + + V Q ++ ++ + ++ G Q T E
Sbjct: 59 SRFQEA-QKREIVEHSYLV-AQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLA 116
Query: 320 ---KNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVVP 439
+ + MVV+G RG G + LLGSVS ++ ++ PV V+P
Sbjct: 117 NISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIP 159
>sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388
Length = 154
Score = 42.0 bits (97), Expect = 0.001
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 266 YSISHNNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 436
+ + PG I + + D+VV+G RGL + LGSVS YV+H+ V +V
Sbjct: 96 WDVKVGEPGRWIRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIV 152
>sp|P64922|YK28_MYCBO Hypothetical protein Mb2028c
sp|P64921|YK05_MYCTU Hypothetical protein Rv2005c/MT2061
Length = 295
Score = 39.3 bits (90), Expect = 0.007
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Frame = +2
Query: 5 ILIPVDGSDYSTKAFEWYAENVMKLDDTVVFIHVIDPPVLN--SLNLSVGMNIPVDDWAS 178
+++ VDGS S A W A + + + +HV++ V + + +D
Sbjct: 10 VVVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETWGVWQEDEGR 69
Query: 179 AIQSGILKAEK----INNELRVRCQLKKLKDEFYSISHNNPGEGIVQFTQEKNIDMVVIG 346
I + +K K + +L V+ +L + P +V+ + E +MVV+G
Sbjct: 70 QIVANAVKLAKEAVGADRKLSVKSELV----------FSTPVPTMVEISNEA--EMVVLG 117
Query: 347 NRGLGKIKRCLLGSVSDYVLHNSSVPVTVV 436
+ G G + R LLGSVS ++ + PV V+
Sbjct: 118 SSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 38.1 bits (87), Expect = 0.016
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 281 NNPGEGIVQFTQEKNIDMVVIGNRGLGKIKRCLLGSVSDYVLHNSSVPVTV 433
+ P +VQ + + +VV+G+ G G + LLGSVS+ VLH + VPV V
Sbjct: 243 DRPARKLVQ--KSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIV 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,962,785
Number of Sequences: 369166
Number of extensions: 970186
Number of successful extensions: 2396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)