DrC_00218
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00218 (722 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q8N806|CN130_HUMAN Protein C14orf130 52 2e-06 sp|Q09329|MLO2_SCHPO Protein mlo2 51 3e-06 sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog 50 6e-06 sp|Q5U405|TMPSD_MOUSE Transmembrane protease, serine 13 (Mo... 34 0.35 sp|Q89730|VGLC_HHV2H Glycoprotein C precursor 34 0.45 sp|P06475|VGLC_HHV23 Glycoprotein C precursor 34 0.45 sp|Q6GA70|MUTS2_STAAS MutS2 protein >gi|38604916|sp|Q8NX56|... 33 0.77 sp|P65496|MUTS2_STAAN MutS2 protein >gi|54041518|sp|P65495|... 33 0.77 sp|Q5HGU0|MUTS2_STAAC MutS2 protein 33 0.77 sp|P03173|VGLC_HHV2G Glycoprotein C precursor (Glycoprotein F) 33 1.0
>sp|Q8N806|CN130_HUMAN Protein C14orf130 Length = 425 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 4/116 (3%) Frame = +3 Query: 276 SFWSADWREKLCRCASCSARMANDECGFLLDKNDSIAQYCAEGGRAE----EDLLVGELC 443 ++W +WR KLC C C + + FL D+ D++ Y +G A+ D L+ L Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLS 362 Query: 444 NLPYSQAIVVAEGIASLQQHIVEFFSSIDRDKSVITAEDVHSFFDKIKRRRLERFD 611 ++ Q + + L+ + ++ + +V+ ED+ FF++ + ++ R D Sbjct: 363 SMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVD 418
Score = 39.3 bits (90), Expect = 0.011
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIY 146
IQCV+CEDW+H +H F+E +C+ CM +L Y
Sbjct: 153 IQCVVCEDWFHGRHLGAIPPESGD-----FQEMVCQACMKRCSFLWAY 195
>sp|Q09329|MLO2_SCHPO Protein mlo2 Length = 329 Score = 51.2 bits (121), Expect = 3e-06 Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 20/220 (9%) Frame = +3 Query: 6 QCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIYNRASINNVLRTRV 185 QC++CEDW+H K E FE +C C S +Y D ++L + Sbjct: 140 QCILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCSEC--SEKYRD--------HLLNQKH 189 Query: 186 DSSDQSECGXXXXXXXXXXXXXXXPGYTCGSFWSADWREKLCRCASCSARMANDECGFLL 365 +S +E F S ++RE LC C SC + + N E L+ Sbjct: 190 ESIAGTERAPL--------------------FLSENFRENLCPCESCIS-LRNLEMPMLV 228 Query: 366 ----------DKNDSIAQYC---AEGGRAEEDLLVGE-------LCNLPYSQAIVVAEGI 485 D D I++ +E G E ++ L LP QA Sbjct: 229 AEEPIYEPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDVLRILDRLPRVQANESVYAY 288 Query: 486 ASLQQHIVEFFSSIDRDKSVITAEDVHSFFDKIKRRRLER 605 L+ + +F + R+ V+T ED+ +FF ++R R+ + Sbjct: 289 NRLKSELTDFLTPFARENRVVTKEDISNFF--LERSRISK 326
>sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog Length = 425 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 4/116 (3%) Frame = +3 Query: 276 SFWSADWREKLCRCASCSARMANDECGFLLDKNDSIAQYCAEGGRAE----EDLLVGELC 443 ++W +WR KLC C C + FL D+ D++ Y +G + D L+ L Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGELDVLFLTDECDTVLAYENKGKNDQATDRRDPLMDTLS 362 Query: 444 NLPYSQAIVVAEGIASLQQHIVEFFSSIDRDKSVITAEDVHSFFDKIKRRRLERFD 611 ++ Q + + L+ + ++ + +V+ ED+ FF++ + ++ R D Sbjct: 363 SMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVD 418
Score = 39.3 bits (90), Expect = 0.011
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIY 146
IQCV+CEDW+H +H F+E +C+ CM +L Y
Sbjct: 153 IQCVVCEDWFHGRHLGAIPPESGD-----FQEMVCQACMRRCSFLWAY 195
>sp|Q5U405|TMPSD_MOUSE Transmembrane protease, serine 13 (Mosaic serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 34.3 bits (77), Expect = 0.35 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 13/102 (12%) Frame = -3 Query: 477 PPQRSPASTADYRALQPADP--------PQRAPPLRNIERC---CRSCRAGSRIRRSPFS 331 PPQ SPA T+ RA A P P R PP + R S S R P Sbjct: 15 PPQASPARTSPARAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSR 74 Query: 330 PNNSRICTASLASPRSRTIRT-CIQATRVTILPAR-RPSRSS 211 ++ R +A AS S R ++AT V +P R P+RS+ Sbjct: 75 SSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSA 116
Score = 30.4 bits (67), Expect = 5.0
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -3
Query: 516 RTPRCAAGERLFLPPQRSPASTADYRALQPADPPQRAPPLRNIERCCRSCRAGS 355
RTP A+ R PPQ SPA +A P RAPP R+ S R+ S
Sbjct: 36 RTPPQASPART--PPQASPARAPPPQASPARASPARAPPSRSSSGRSSSARSAS 87
>sp|Q89730|VGLC_HHV2H Glycoprotein C precursor Length = 480 Score = 33.9 bits (76), Expect = 0.45 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = -3 Query: 513 TPRCAAGERLF-LPPQRSPASTADYRALQPADPPQRAPPLRNIE--RCCRS---CRAGSR 352 +PR A+ R PPQ A+ + +PA PP+ PP + E RC R R GSR Sbjct: 49 SPRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVRCNRHDPLARYGSR 108 Query: 351 IRRSPFSPNNSR 316 ++ PN++R Sbjct: 109 VQIRCRFPNSTR 120
>sp|P06475|VGLC_HHV23 Glycoprotein C precursor Length = 480 Score = 33.9 bits (76), Expect = 0.45 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = -3 Query: 513 TPRCAAGERLF-LPPQRSPASTADYRALQPADPPQRAPPLRNIE--RCCRS---CRAGSR 352 +PR A+ R PPQ A+ + +PA PP+ PP + E RC R R GSR Sbjct: 49 SPRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVRCNRHDPLARYGSR 108 Query: 351 IRRSPFSPNNSR 316 ++ PN++R Sbjct: 109 VQIRCRFPNSTR 120
>sp|Q6GA70|MUTS2_STAAS MutS2 protein sp|Q8NX56|MUTS2_STAAW MutS2 protein Length = 782 Score = 33.1 bits (74), Expect = 0.77 Identities = 25/93 (26%), Positives = 47/93 (50%) Frame = -1 Query: 614 LVESLESSAFDFIEEAVDILGGDDRFVSIDAAEELHDVLLERGYSFRHNDRLRVRQITEL 435 ++ESLE + + +++ DR V AE++HD L ++ F++ ++ + + E Sbjct: 523 MIESLERNYKRVETQRLEL----DRLVK--EAEQVHDDLSKQYQQFQNYEKSLIEEAKEK 576 Query: 434 SNQQILLSAPPLCAILSDAVVLVEQEAAFVVRH 336 +NQ+I + I+ D L EQ+ A V H Sbjct: 577 ANQKIKAATKEADDIIKDLRQLREQKGADVKEH 609
>sp|P65496|MUTS2_STAAN MutS2 protein sp|P65495|MUTS2_STAAM MutS2 protein Length = 782 Score = 33.1 bits (74), Expect = 0.77 Identities = 25/93 (26%), Positives = 47/93 (50%) Frame = -1 Query: 614 LVESLESSAFDFIEEAVDILGGDDRFVSIDAAEELHDVLLERGYSFRHNDRLRVRQITEL 435 ++ESLE + + +++ DR V AE++HD L ++ F++ ++ + + E Sbjct: 523 MIESLERNYKRVETQRLEL----DRLVK--EAEQVHDDLSKQYQQFQNYEKSLIEEAKEK 576 Query: 434 SNQQILLSAPPLCAILSDAVVLVEQEAAFVVRH 336 +NQ+I + I+ D L EQ+ A V H Sbjct: 577 ANQKIKAATKEADDIIKDLRQLREQKGADVKEH 609
>sp|Q5HGU0|MUTS2_STAAC MutS2 protein Length = 782 Score = 33.1 bits (74), Expect = 0.77 Identities = 25/93 (26%), Positives = 47/93 (50%) Frame = -1 Query: 614 LVESLESSAFDFIEEAVDILGGDDRFVSIDAAEELHDVLLERGYSFRHNDRLRVRQITEL 435 ++ESLE + + +++ DR V AE++HD L ++ F++ ++ + + E Sbjct: 523 MIESLERNYKRVETQRLEL----DRLVK--EAEQVHDDLSKQYQQFQNYEKSLIEEAKEK 576 Query: 434 SNQQILLSAPPLCAILSDAVVLVEQEAAFVVRH 336 +NQ+I + I+ D L EQ+ A V H Sbjct: 577 ANQKIKAATKEADDIIKDLRQLREQKGADVKEH 609
>sp|P03173|VGLC_HHV2G Glycoprotein C precursor (Glycoprotein F) Length = 479 Score = 32.7 bits (73), Expect = 1.0 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = -3 Query: 477 PPQRSPASTADYRALQPADPPQRAPPLRNIE--RCCRS---CRAGSRIRRSPFSPNNSR 316 PPQ A+ + +PA PP+ PP + E RC R R GSR++ PN++R Sbjct: 61 PPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVRCNRHDPLARYGSRVQIRCRFPNSTR 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,722,506
Number of Sequences: 369166
Number of extensions: 1502751
Number of successful extensions: 6447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6422
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
