Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_H06
(400 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog 39 0.003
sp|Q8N806|CN130_HUMAN Protein C14orf130 39 0.003
sp|Q09329|MLO2_SCHPO Protein mlo2 38 0.008
sp|Q02395|MTF2_MOUSE Metal-response element-binding transcr... 31 0.78
sp|Q5R7T9|MTF2_PONPY Metal-response element-binding transcr... 31 0.78
sp|Q9HDV4|LID2_SCHPO Lid2 complex component lid2 (Lid2C com... 31 1.0
sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfa... 30 2.3
sp|Q9ZW33|TIM10_ARATH Mitochondrial import inner membrane t... 30 2.3
sp|Q12189|RPIA_YEAST Ribose-5-phosphate isomerase (Phosphor... 30 2.3
sp|Q9CR75|FN14_MOUSE Tumor necrosis factor receptor superfa... 30 2.3
>sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog
Length = 425
Score = 39.3 bits (90), Expect = 0.003
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIY 146
IQCV+CEDW+H +H F+E +C+ CM +L Y
Sbjct: 153 IQCVVCEDWFHGRHLGAIPPESGD-----FQEMVCQACMRRCSFLWAY 195
Score = 35.8 bits (81), Expect = 0.032
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 276 SFWSADWREKLCRCASCSARMANDECGFLLDKNDSIAQY 392
++W +WR KLC C C + FL D+ D++ Y
Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGELDVLFLTDECDTVLAY 341
>sp|Q8N806|CN130_HUMAN Protein C14orf130
Length = 425
Score = 39.3 bits (90), Expect = 0.003
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIY 146
IQCV+CEDW+H +H F+E +C+ CM +L Y
Sbjct: 153 IQCVVCEDWFHGRHLGAIPPESGD-----FQEMVCQACMKRCSFLWAY 195
Score = 36.6 bits (83), Expect = 0.018
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 276 SFWSADWREKLCRCASCSARMANDECGFLLDKNDSIAQY 392
++W +WR KLC C C + + FL D+ D++ Y
Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAY 341
>sp|Q09329|MLO2_SCHPO Protein mlo2
Length = 329
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/107 (26%), Positives = 40/107 (37%)
Frame = +3
Query: 6 QCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIYNRASINNVLRTRV 185
QC++CEDW+H K E FE +C C S +Y D ++L +
Sbjct: 140 QCILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCSEC--SEKYRD--------HLLNQKH 189
Query: 186 DSSDQSECGXXXXXXXXXXXXXXXPGYTWGSFWSADWREKLCRCASC 326
+S +E F S ++RE LC C SC
Sbjct: 190 ESIAGTERAPL--------------------FLSENFRENLCPCESC 216
>sp|Q02395|MTF2_MOUSE Metal-response element-binding transcription factor 2
(Zinc-regulated factor 1) (ZiRF1) (Metal-response
element DNA-binding protein M96)
Length = 593
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYL 137
+QC C+ W+H +RF FIC +C + EYL
Sbjct: 217 LQCCKCKQWFH--EACVQCLQKPMLFGDRFYTFICSVCSSGPEYL 259
>sp|Q5R7T9|MTF2_PONPY Metal-response element-binding transcription factor 2
sp|Q9Y483|MTF2_HUMAN Metal-response element-binding transcription factor 2
(Metal-response element DNA-binding protein M96)
Length = 593
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYL 137
+QC C+ W+H +RF FIC +C + EYL
Sbjct: 217 LQCCKCKQWFH--EACVQCLQKPMLFGDRFYTFICSVCSSGPEYL 259
>sp|Q9HDV4|LID2_SCHPO Lid2 complex component lid2 (Lid2C component lid2)
Length = 1513
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 3 IQCVICEDWYHLKHXXXXXXXXXXXXMERFEEFICKLCMTSREYLDIYNRASINNV 170
I+C IC +WYH K + + E+F C +C E + NR + ++
Sbjct: 1110 IECEICHEWYHAK-----CLKMSKKKLRQDEKFTCPICDYRVEIPRLSNRPKLEDL 1160
>sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfamily member Fn14 precursor
(Fibroblast growth factor-inducible immediate-early
response protein 14) (FGF-inducible 14) (Tweak-receptor)
(TweakR) (CD266 antigen)
Length = 129
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 273 GSFWSADWREKLCRCASCSARMANDEC 353
GS WSAD +K CASC AR +D C
Sbjct: 39 GSSWSADL-DKCMDCASCRARPHSDFC 64
>sp|Q9ZW33|TIM10_ARATH Mitochondrial import inner membrane translocase subunit Tim10
Length = 83
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 238 QNCHSRCLDTRGDRSGARTGERSCADARVVRREWR 342
Q C ++C+D R + GE SC D R V + W+
Sbjct: 34 QTCFNKCVDKRYKEAELNMGENSCID-RCVSKYWQ 67
>sp|Q12189|RPIA_YEAST Ribose-5-phosphate isomerase (Phosphoriboisomerase)
(D-ribose-5-phosphate ketol-isomerase)
Length = 258
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 146 VDVEILAGCHAQLANELLEALHVQRVQLARG 54
V +EI+ + ++ N+LLE LH ++V + +G
Sbjct: 161 VPIEIVPSSYVRVKNDLLEQLHAEKVDIRQG 191
>sp|Q9CR75|FN14_MOUSE Tumor necrosis factor receptor superfamily member Fn14 precursor
(Fibroblast growth factor-inducible immediate-early
response protein 14) (FGF-inducible 14) (Fibroblast
growth factor regulated protein 2) (Tweak-receptor)
(TweakR)
Length = 129
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 273 GSFWSADWREKLCRCASCSARMANDEC 353
GS WSAD +K CASC AR +D C
Sbjct: 39 GSSWSADL-DKCMDCASCPARPHSDFC 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,946,413
Number of Sequences: 369166
Number of extensions: 799547
Number of successful extensions: 3421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3412
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)