Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B17
(694 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N806|CN130_HUMAN Protein C14orf130 52 1e-06
sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog 50 6e-06
sp|Q09329|MLO2_SCHPO Protein mlo2 38 0.029
sp|Q5U405|TMPSD_MOUSE Transmembrane protease, serine 13 (Mo... 34 0.32
sp|Q89730|VGLC_HHV2H Glycoprotein C precursor 34 0.42
sp|P06475|VGLC_HHV23 Glycoprotein C precursor 34 0.42
sp|Q6GA70|MUTS2_STAAS MutS2 protein >gi|38604916|sp|Q8NX56|... 33 0.71
sp|P65496|MUTS2_STAAN MutS2 protein >gi|54041518|sp|P65495|... 33 0.71
sp|Q5HGU0|MUTS2_STAAC MutS2 protein 33 0.71
sp|P03173|VGLC_HHV2G Glycoprotein C precursor (Glycoprotein F) 33 0.93
>sp|Q8N806|CN130_HUMAN Protein C14orf130
Length = 425
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +2
Query: 248 SFWSADWREKLCRCASCSARMANDECGFLLDKNDSIAQYCAEGGRAE----EDLLVGELC 415
++W +WR KLC C C + + FL D+ D++ Y +G A+ D L+ L
Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLS 362
Query: 416 NLPYSQAIVVAEGIASLQQHIVEFFSSIDRDKSVITAEDVHSFFDKIKRRRLERFD 583
++ Q + + L+ + ++ + +V+ ED+ FF++ + ++ R D
Sbjct: 363 SMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVD 418
>sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog
Length = 425
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +2
Query: 248 SFWSADWREKLCRCASCSARMANDECGFLLDKNDSIAQYCAEGGRAE----EDLLVGELC 415
++W +WR KLC C C + FL D+ D++ Y +G + D L+ L
Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGELDVLFLTDECDTVLAYENKGKNDQATDRRDPLMDTLS 362
Query: 416 NLPYSQAIVVAEGIASLQQHIVEFFSSIDRDKSVITAEDVHSFFDKIKRRRLERFD 583
++ Q + + L+ + ++ + +V+ ED+ FF++ + ++ R D
Sbjct: 363 SMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVD 418
>sp|Q09329|MLO2_SCHPO Protein mlo2
Length = 329
Score = 37.7 bits (86), Expect = 0.029
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Frame = +2
Query: 251 FWSADWREKLCRCASCSARMANDECGFLL----------DKNDSIAQYC---AEGGRAEE 391
F S ++RE LC C SC + + N E L+ D D I++ +E G E
Sbjct: 201 FLSENFRENLCPCESCIS-LRNLEMPMLVAEEPIYEPPEDSEDGISEMNEDPSESGEMIE 259
Query: 392 DLLVGE-------LCNLPYSQAIVVAEGIASLQQHIVEFFSSIDRDKSVITAEDVHSFFD 550
++ L LP QA L+ + +F + R+ V+T ED+ +FF
Sbjct: 260 QVISSTMNDVLRILDRLPRVQANESVYAYNRLKSELTDFLTPFARENRVVTKEDISNFF- 318
Query: 551 KIKRRRLER 577
++R R+ +
Sbjct: 319 -LERSRISK 326
>sp|Q5U405|TMPSD_MOUSE Transmembrane protease, serine 13 (Mosaic serine protease)
(Membrane-type mosaic serine protease)
Length = 543
Score = 34.3 bits (77), Expect = 0.32
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Frame = -3
Query: 449 PPQRSPASTADYRALQPADP--------PQRAPPLRNIERC---CRSCRAGSRIRRSPFS 303
PPQ SPA T+ RA A P P R PP + R S S R P
Sbjct: 15 PPQASPARTSPARAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSR 74
Query: 302 PNNSRICTASLASPRSRTIRT-CIQATRVTILPAR-RPSRSS 183
++ R +A AS S R ++AT V +P R P+RS+
Sbjct: 75 SSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSA 116
Score = 30.4 bits (67), Expect = 4.6
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -3
Query: 488 RTPRCAAGERLFLPPQRSPASTADYRALQPADPPQRAPPLRNIERCCRSCRAGS 327
RTP A+ R PPQ SPA +A P RAPP R+ S R+ S
Sbjct: 36 RTPPQASPART--PPQASPARAPPPQASPARASPARAPPSRSSSGRSSSARSAS 87
>sp|Q89730|VGLC_HHV2H Glycoprotein C precursor
Length = 480
Score = 33.9 bits (76), Expect = 0.42
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = -3
Query: 485 TPRCAAGERLF-LPPQRSPASTADYRALQPADPPQRAPPLRNIE--RCCRS---CRAGSR 324
+PR A+ R PPQ A+ + +PA PP+ PP + E RC R R GSR
Sbjct: 49 SPRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVRCNRHDPLARYGSR 108
Query: 323 IRRSPFSPNNSR 288
++ PN++R
Sbjct: 109 VQIRCRFPNSTR 120
>sp|P06475|VGLC_HHV23 Glycoprotein C precursor
Length = 480
Score = 33.9 bits (76), Expect = 0.42
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = -3
Query: 485 TPRCAAGERLF-LPPQRSPASTADYRALQPADPPQRAPPLRNIE--RCCRS---CRAGSR 324
+PR A+ R PPQ A+ + +PA PP+ PP + E RC R R GSR
Sbjct: 49 SPRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVRCNRHDPLARYGSR 108
Query: 323 IRRSPFSPNNSR 288
++ PN++R
Sbjct: 109 VQIRCRFPNSTR 120
>sp|Q6GA70|MUTS2_STAAS MutS2 protein
sp|Q8NX56|MUTS2_STAAW MutS2 protein
Length = 782
Score = 33.1 bits (74), Expect = 0.71
Identities = 25/93 (26%), Positives = 47/93 (50%)
Frame = -1
Query: 586 LVESLESSAFDFIEEAVDILGGDDRFVSIDAAEELHDVLLERGYSFRHNDRLRVRQITEL 407
++ESLE + + +++ DR V AE++HD L ++ F++ ++ + + E
Sbjct: 523 MIESLERNYKRVETQRLEL----DRLVK--EAEQVHDDLSKQYQQFQNYEKSLIEEAKEK 576
Query: 406 SNQQILLSAPPLCAILSDAVVLVEQEAAFVVRH 308
+NQ+I + I+ D L EQ+ A V H
Sbjct: 577 ANQKIKAATKEADDIIKDLRQLREQKGADVKEH 609
>sp|P65496|MUTS2_STAAN MutS2 protein
sp|P65495|MUTS2_STAAM MutS2 protein
Length = 782
Score = 33.1 bits (74), Expect = 0.71
Identities = 25/93 (26%), Positives = 47/93 (50%)
Frame = -1
Query: 586 LVESLESSAFDFIEEAVDILGGDDRFVSIDAAEELHDVLLERGYSFRHNDRLRVRQITEL 407
++ESLE + + +++ DR V AE++HD L ++ F++ ++ + + E
Sbjct: 523 MIESLERNYKRVETQRLEL----DRLVK--EAEQVHDDLSKQYQQFQNYEKSLIEEAKEK 576
Query: 406 SNQQILLSAPPLCAILSDAVVLVEQEAAFVVRH 308
+NQ+I + I+ D L EQ+ A V H
Sbjct: 577 ANQKIKAATKEADDIIKDLRQLREQKGADVKEH 609
>sp|Q5HGU0|MUTS2_STAAC MutS2 protein
Length = 782
Score = 33.1 bits (74), Expect = 0.71
Identities = 25/93 (26%), Positives = 47/93 (50%)
Frame = -1
Query: 586 LVESLESSAFDFIEEAVDILGGDDRFVSIDAAEELHDVLLERGYSFRHNDRLRVRQITEL 407
++ESLE + + +++ DR V AE++HD L ++ F++ ++ + + E
Sbjct: 523 MIESLERNYKRVETQRLEL----DRLVK--EAEQVHDDLSKQYQQFQNYEKSLIEEAKEK 576
Query: 406 SNQQILLSAPPLCAILSDAVVLVEQEAAFVVRH 308
+NQ+I + I+ D L EQ+ A V H
Sbjct: 577 ANQKIKAATKEADDIIKDLRQLREQKGADVKEH 609
>sp|P03173|VGLC_HHV2G Glycoprotein C precursor (Glycoprotein F)
Length = 479
Score = 32.7 bits (73), Expect = 0.93
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 449 PPQRSPASTADYRALQPADPPQRAPPLRNIE--RCCRS---CRAGSRIRRSPFSPNNSR 288
PPQ A+ + +PA PP+ PP + E RC R R GSR++ PN++R
Sbjct: 61 PPQPRKATKSKASTAKPAPPPKTGPPKTSSEPVRCNRHDPLARYGSRVQIRCRFPNSTR 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,748,487
Number of Sequences: 369166
Number of extensions: 1441128
Number of successful extensions: 6015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5999
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)