DrC_00217
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00217 (812 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q99MJ9|DDX50_MOUSE DEAD-box protein 50 (Nucleolar protei... 54 7e-07 sp|Q9BQ39|DDX50_HUMAN DEAD-box protein 50 (Nucleolar protei... 53 9e-07 sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar ... 42 0.002 sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar ... 38 0.029 sp|Q57801|Y355_METJA Hypothetical protein MJ0355 33 0.71 sp|Q8K4G5|ABLM1_MOUSE Actin-binding LIM protein 1 (Actin-bi... 33 0.71 sp|O87131|CHER1_PSEAE Chemotaxis protein methyltransferase 1 33 1.2 sp|P55249|LX12E_MOUSE Arachidonate 12-lipoxygenase, epiderm... 32 2.7 sp|Q88VS3|SYGB_LACPL Glycyl-tRNA synthetase beta chain (Gly... 32 2.7 sp|Q8G6D6|PGK_BIFLO Phosphoglycerate kinase 31 3.5
>sp|Q99MJ9|DDX50_MOUSE DEAD-box protein 50 (Nucleolar protein Gu2) (Gu-beta) Length = 734 Score = 53.5 bits (127), Expect = 7e-07 Identities = 38/144 (26%), Positives = 67/144 (46%) Frame = +2 Query: 44 DKYKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTA 223 D ++ A+ LI+E G VD+++ + +S G SS + P S +T G+ Sbjct: 540 DFFRPSAQRLIEEKGAVDALAAALAHIS------GASSFE-------PRSLITSDKGFVT 586 Query: 224 YHFIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWR 403 + +EI +K L R + +AV + R+ K G FD+PT + Q+ W Sbjct: 587 MTLESPEEIQDVSCAWKELNRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWH 646 Query: 404 DGKYDTLQLLEGEIPELDESTGGS 475 D D + + ++PE++E G+ Sbjct: 647 DS--DWILSVPAKLPEIEEYYDGN 668
>sp|Q9BQ39|DDX50_HUMAN DEAD-box protein 50 (Nucleolar protein Gu2) (Gu-beta) Length = 737 Score = 53.1 bits (126), Expect = 9e-07 Identities = 39/144 (27%), Positives = 68/144 (47%) Frame = +2 Query: 44 DKYKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTA 223 D ++ A+ LI+E G VD+++ + +S G SS + P S +T G+ Sbjct: 543 DFFRPSAQRLIEEKGAVDALAAALAHIS------GASSFE-------PRSLITSDKGFVT 589 Query: 224 YHFIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWR 403 + +EI +K L R + +AV +I R+ K G FD+PT + Q+ W Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWH 649 Query: 404 DGKYDTLQLLEGEIPELDESTGGS 475 D D + + ++PE++E G+ Sbjct: 650 DS--DWILSVPAKLPEIEEYYDGN 671
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD-box protein 21) Length = 783 Score = 42.0 bits (97), Expect = 0.002 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 3/144 (2%) Frame = +2 Query: 50 YKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTAYH 229 +K+ A+ LI+E G V++++ + +S G +S + S + +G+ Sbjct: 594 FKQSAEKLIEEKGAVEALAAALAHIS------GATSVDQR-------SLINSNVGFVTMI 640 Query: 230 FIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWRDG 409 E+ + Y +K LK + E+ K++ + K G FD+PT Q W D Sbjct: 641 LQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDS 700 Query: 410 KYDTLQLLEGEIPELD---ESTGG 472 + L + E PEL+ E GG Sbjct: 701 RRWQLSVAT-EQPELEGpreGYGG 723
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD-box protein 21) Length = 851 Score = 38.1 bits (87), Expect = 0.029 Identities = 33/141 (23%), Positives = 60/141 (42%) Frame = +2 Query: 50 YKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTAYH 229 +K+ A+ LI+E G V++++ + +S G +S + S + + G+ Sbjct: 666 FKQSAEKLIEEKGAVEALAAALAHIS------GATSVDQR-------SLINSQAGFVTMI 712 Query: 230 FIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWRDG 409 E+ + Y +K LK + E K++ + K G FD+ T+ Q W D Sbjct: 713 LRCSIEMPNISYAWKELKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDS 772 Query: 410 KYDTLQLLEGEIPELDESTGG 472 + L + E PEL+ G Sbjct: 773 RRWQLTVAT-EQPELEGPQDG 792
>sp|Q57801|Y355_METJA Hypothetical protein MJ0355 Length = 109 Score = 33.5 bits (75), Expect = 0.71 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = +2 Query: 194 KLTGRIGYTAYHFIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQ----TKDLKGFVFD 361 + GR+ + F++DKEI + S K ++E DA + E +++ +K + G V + Sbjct: 39 RFDGRMWIMGFEFLSDKEIKYSCFENYSFKCILETDAKKVREFLEEIYSKSKIVNGRVKE 98 Query: 362 LPTDV 376 +PTDV Sbjct: 99 IPTDV 103
>sp|Q8K4G5|ABLM1_MOUSE Actin-binding LIM protein 1 (Actin-binding LIM protein family member 1) (abLIM-1) Length = 861 Score = 33.5 bits (75), Expect = 0.71 Identities = 22/69 (31%), Positives = 34/69 (49%) Frame = +2 Query: 116 CLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTAYHFIADKEISSKGYLFKSLKRLIE 295 CL +S K + S+ ++S PGS + G G+T Y + D EI +K L + + Sbjct: 381 CLTNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIYAKV-DNEILD----YKDLAAIPK 435 Query: 296 EDAVEKIER 322 A+ IER Sbjct: 436 VKAIYDIER 444
>sp|O87131|CHER1_PSEAE Chemotaxis protein methyltransferase 1 Length = 274 Score = 32.7 bits (73), Expect = 1.2 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = +2 Query: 251 SSKGYLFKS-LKRLIEEDAVEKI-ERVQQTKDLKGFVFDLPTDVDDTFQSNWRDGKYDTL 424 S+K YL S L +L+E+ ++ + E VQ+ + +G + ++ D T ++ W Y Sbjct: 25 SNKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQRGGLREMVVDAMTTNETLWFRDTYPFE 84 Query: 425 QLLEGEIPELDESTGG 472 L + +PEL ++ GG Sbjct: 85 VLKQRVLPELIKANGG 100
>sp|P55249|LX12E_MOUSE Arachidonate 12-lipoxygenase, epidermal-type (12-LOX) Length = 662 Score = 31.6 bits (70), Expect = 2.7 Identities = 18/75 (24%), Positives = 34/75 (45%) Frame = +2 Query: 230 FIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWRDG 409 F+ DK++ L K LK + ++ + RVQ+ +D + T + + + +W++ Sbjct: 166 FMKDKDLDFSLSLVKELKNFAIKGTLDFVSRVQKLEDYQKVFPHTKTALPERVRGSWKED 225 Query: 410 KYDTLQLLEGEIPEL 454 Q L G P L Sbjct: 226 ALFGYQFLNGANPML 240
>sp|Q88VS3|SYGB_LACPL Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain) (GlyRS) Length = 694 Score = 31.6 bits (70), Expect = 2.7 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Frame = +2 Query: 197 LTGRIGYTAYHFIADKEISSKGYLFKSLKRLIEEDAV----EKIERVQQTKDLKGFVFDL 364 LT R+ A+ + D++ S + Y+ + LK++ D + EK++RV D F L Sbjct: 320 LTARLEDAAFFYHEDQQHSIQEYV-ERLKKVSFHDKIGTMYEKMQRVMIISDFLADRFGL 378 Query: 365 PTDVDDTFQSNWRDGKYDTLQLLEGEIPELDESTGGSY 478 + + K+D + + GE PEL G Y Sbjct: 379 TETEKNQLHRAAQIYKFDLVTGMVGEFPELQGVMGDKY 416
>sp|Q8G6D6|PGK_BIFLO Phosphoglycerate kinase Length = 401 Score = 31.2 bits (69), Expect = 3.5 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 13/95 (13%) Frame = +2 Query: 131 EKETNGVSSKKSKPVHSGP----GSKLTGRIGYTAYHFI-ADKEISSKGYLFKSLKR--- 286 EKE +S P GSK++ ++G A++ + G +F LK Sbjct: 175 EKEVKALSKATENPERPFTVVLGGSKVSDKLGVIENLLDKANRLVIGGGMVFTFLKAKGY 234 Query: 287 -----LIEEDAVEKIERVQQTKDLKGFVFDLPTDV 376 L+EED +EK++ +T + G LPTDV Sbjct: 235 EVGTSLLEEDQLEKVKGYIETAEKNGVELVLPTDV 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,724,991
Number of Sequences: 369166
Number of extensions: 1478344
Number of successful extensions: 3877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3877
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
