Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_E13
(286 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58710|COBD_METJA Probable cobalamin biosynthesis protei... 29 3.8
sp|O42690|CDR3_CANAL Opaque-specific ABC transporter CDR3 29 3.8
>sp|Q58710|COBD_METJA Probable cobalamin biosynthesis protein cobD
Length = 307
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 269 NLFKTIGSIRKYL*FLFGNKTTFIQM 192
N+FK+ KY FLFG+ TTFI +
Sbjct: 39 NIFKSTNCKNKYRDFLFGSLTTFITL 64
>sp|O42690|CDR3_CANAL Opaque-specific ABC transporter CDR3
Length = 1501
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 269 NLFKTIGSIRKYL*FLFGNKTTFIQMNCTNIRNLDNTVYR 150
N+++ G + ++ FLFG F+Q N ++I + V+R
Sbjct: 750 NVWRNFGVLMAFIIFLFGTTIFFVQTNKSSISKGETLVFR 789
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,228,371
Number of Sequences: 369166
Number of extensions: 423092
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)